Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0107 ATGACTTATTCAGTTGCTTTGTGGATATACCTGCAGAGCCAGGCAACATCATCATGTCTGAATTTTCTTTGTAGGATAATACTGAAGCTTCTTGAGAAGTCAAGGAATTGCTACATAGGAAGATCATTTCGCAGACACGTACGAAACTCTGATTGTACCAAGGTTTATGTTGAGTACTGGTGTGAAAACCTTATAAAGGGAATACCATCGTGGTTGGTGAGACCAAAACATCGAAAGCATGTCACTTGTGAGACCAGTTTCTCACTGCATAAAAGGACTCAATGGGAACATAAAATGCAATCCGACAATGGCAAGTTATTTATTGGTGGGATATCATGGGACACAAATGAAGAGCGGCTTAGAGAGTATTTTAGTTCTTATGGGGAGATTGTGGAAGCAGTGATTATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTCGGTTTTGTAGTTTTTGCAGACCCAACTGTTGCAGAGAGAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCCAAGAAGGCTGTTCCAAGGGATGACCAGAGCATACTGAGTAGAAACAGTGGTAGCAACCATGGTTCTCCTGGTCCAGGCCGCACAAAGAAGATATTTGTTGGTGGTTTAGCATCTACAGTTACAGAGAGTGATTTCAAGAAGTACTTTGATCAATTTGGGACAATAACAGATGTTGTAGTTATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATTACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACCTTCCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCATGCAGTTCCTAAGGAACTATCACCTGGGCCAAACCGAAGCCCACTCACTGGATATAACTATGGTATGAATAGGGTCAATAGTTTCCTAACTGGCTTCACCCAGGGCTATACTCCAGGTGCTGTTGGGGGCTTTGGACTCAGGGTGGATGGTAGATTCAGTCCTGTTGCAAGTGGCCGAAGTGGGTTTTCGCCATTTGGATTGGGTTATGGAATGAATATGAATTTTGAGCCTGGTTTGAGCCCTGGATTTGGAGGGAATGCAAATTTCAATAACAATCTTAGTTATGGTCGGGGAATAAATCCATATTATATCGGAAGCTCAAGTAGGTTTGGGAGTCCTATTGGGTATGATGGTAATAATGGAGGAAACAATTCTTTCTTCAGCTCTGTAACTCGGAACTTGTGGGGAACTGGTAGCCTTAATTATGGAACAAGTTCTGCTAATTCCAGTGCATACACTGGATCAGGAAGTGGGAATGTTGGAGGAAATATTTATGGCAATGCTGGAGTCAATTGGGGTTCTTCAGCAATTTCTGCTCAAGGTACAATGAACAATGCATCACAAAGTAGCGGTGGTAACCTTGGCTTTGGGGGAGACGACAATGGTTATGGTTTGGGAACTAGAGGATATGGAAGAAACAGCGGTCCCAATATTGCTCCAACATCATCATACTCTGCATCAAATGGTGGTTTTGATGGAGCTTTGGCTGGTTTATACAATAATAGTTCAGTTTACGGGGACCCCACTTGGCGGTCCTCAAATTCTGAGCTAGATGGATCTGGTCCCTTTGGTTATGGGCTTGGTGCTGCAGCTTCAGATGTTTCTGCTAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGAATTGCTACATAG 1734 0.4296 MTYSVALWIYLQSQATSSCLNFLCRIILKLLEKSRNCYIGRSFRRHVRNSDCTKVYVEYWCENLIKGIPSWLVRPKHRKHVTCETSFSLHKRTQWEHKMQSDNGKLFIGGISWDTNEERLREYFSSYGEIVEAVIMKDRTTGRARGFGFVVFADPTVAERVIKEKHNIDGRMVEAKKAVPRDDQSILSRNSGSNHGSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKHAVPKELSPGPNRSPLTGYNYGMNRVNSFLTGFTQGYTPGAVGGFGLRVDGRFSPVASGRSGFSPFGLGYGMNMNFEPGLSPGFGGNANFNNNLSYGRGINPYYIGSSSRFGSPIGYDGNNGGNNSFFSSVTRNLWGTGSLNYGTSSANSSAYTGSGSGNVGGNIYGNAGVNWGSSAISAQGTMNNASQSSGGNLGFGGDDNGYGLGTRGYGRNSGPNIAPTSSYSASNGGFDGALAGLYNNSSVYGDPTWRSSNSELDGSGPFGYGLGAAASDVSAKSSPGYVGGYTVNKRQPNRGIAT 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0107 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 180 IPR000504 GO:0003723
Lele27g0107 577 Gene3D - 102 186 IPR012677 -
Lele27g0107 577 SUPERFAMILY RNA-binding domain, RBD 97 202 IPR035979 GO:0003676
Lele27g0107 577 SMART rrm1_1 205 277 IPR000504 GO:0003723
Lele27g0107 577 SMART rrm1_1 105 176 IPR000504 GO:0003723
Lele27g0107 577 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 99 573 - -
Lele27g0107 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 281 IPR000504 GO:0003723
Lele27g0107 577 MobiDBLite consensus disorder prediction 184 198 - -
Lele27g0107 577 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 185 - -
Lele27g0107 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 263 IPR000504 GO:0003723
Lele27g0107 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 167 IPR000504 GO:0003723
Lele27g0107 577 Gene3D - 201 287 IPR012677 -
Lele27g0107 577 MobiDBLite consensus disorder prediction 179 203 - -
Lele27g0107 577 MobiDBLite consensus disorder prediction 553 577 - -
Lele27g0107 577 FunFam Heterogeneous nuclear ribonucleoprotein 1 201 288 - -
Lele27g0107 577 CDD RRM1_hnRNPA_hnRNPD_like 106 176 - -
Lele27g0107 577 CDD RRM2_DAZAP1 202 281 IPR034131 GO:0003723
Lele27g0107 577 SUPERFAMILY RNA-binding domain, RBD 203 291 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0107 Lele-ChrLele27 887288 896521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0107 106 379 Eukaryotic Initiation Factors Gene Family AT1G71770 25.157 1.04e-15 78.6