Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0081 ATGGACCAACTCTCCGCGGGGCCTCTCGTCCCAGCCGTCAAATCCGACCCCTCCAAGCCCCTCGCCGCCGCCTCTGATACCGCCGCTGCCGCCGCCGCCGACAATTATTCCTCCGAGCCTTTCATGTCCGAACCGGACAAGGATTTCTTGTGCCCGATTTGCATGCAGATCATCAAGGACGCTTTCCTCACTGCTTGCGGCCACAGCTTCTGCTATATGTGTGTCAGTACCCACCTCCGCAACAAGTGTGATTGCCCTTGTTGTGGTCAGTACCTCACCAGCAACCAGTTGTTCCCTAATTTCTTGCTTGATAAGCTACTAAAGAAGACCTCCGCTTGTCAAATGTCAAAAACCGCATCACCTGTCGAACATTTTCGGTTGTCATTGCAAAAGGGTTGTGATGTGACAATTAAGGAGGTAGACTCCCTTTTGTTCATCCTTGCTGAGAAGAAAAGAAAAATGGAACAAGAAGAGGCTGAGAGAAATATGCAGATATTGCTAGACTTCTTGTATTGCTTAAGGAAGCAAAAAGTTGAAGAACTGAAGGAGGTGCAAACTAATCTCCAGTTCATAAAAGAGGACATAAGTGCTGTGGACAGACATAGAATGGAGTTGTATCATGCAAGAGACAGGTACTCCGTGAAATTGAGGATGCTTGATGAGTCTGGATCAAGAAAGTCATGGCATTCATCAATGAATAAGGCCAGCAGTGGTATGTCTAGTCCTCTAACTATGAGAGGAGTGTTGTCTTCTGGGAGTCTTCCAAAGAAACTTGATGGGAAGGGGCAATTCAATGATCTGCAAGAATGTTACCTACAAAAACGACGTCATCCAGCAGAGAAGCCTCATAGCCAACAAGAAAAAGATAAAAATGTCATAAACCGAGAGGGTTATGCTCCTGGTCTTTCAGAGTTTCAATCAGTATTGACAACTTTCACACAATACAGTCGACTAAGGGTCATTGCTGAAGTTAGGCATGGGGATCTGTTTCATTCCGCCAACATTGTGTCAAGCATTGAGTTTGACCGTGATGATGAGTTGTTTGCCACAGCTGGAGTTTCCCGACGCATAAAAGTTTTTGATTTCTCTACTGTTGTTAATGAACCTTCAGATGCACACTGTCCTGTTATGGAGATGTCTACACGCACAAAACTCAGTTGCTTGAGTTGGAACAAATATGCAAAGAACCAAATAGCTAGTAGTGATTATGAAGGAATTGTAACTGTTTGGGATGTAACCACTCGTCAGAGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCTTGGAGCGTTGATTTTTCAAGAACAGATCCCTCCATGCTTGTCTCTGGCAGTGATGACTGCAAGGTGATCCAGAACATTCAACTTATGTTCCTTCTCAGTAGCTTTGTATGTTTGTCAATGTGGTTTTATGAAATGCTTGTGACCTTGATTGTTGGGGCACTTGACAAGAAACTTTCACAAGATCTCGCCGTGACGCGGTGGATGAGGGAGGAGGGAACAGTTAAAGTTTGGTGCACAAAGCAGGAGGCCAGTGTCCTCAACATAGACATGAAAGCAAACATATGTTGCGTCAAGTATAATCCAGGATCTGGAAATTACATTGCAGTTGGTTCAGCAGACCATCACATCCATTATTATGATTTGAGAAATATCAGCCGTCCCCTCCATGTCTTCAGTGGCCACAGAAAGACTGTTTCTTATGTAAAATTTTTATCTAATAATGAACTTGCATCTGCATCAACGGATAGTACGCTGCGATTATGGGATGTAAAGGAAAATATACGGGCCTTAAATCAGTGGTTCGGGGACATTAGTTTGCTTAAAGTTAGTGGCTATTCTGAGGTTCGTACTTTTAAAGGCCACACAAATGAGAAAAATTTTGTTGGTCTAACAGTCAACAGCGACTACATAGCTTGTGGCAGTGAAACAAATGAAGTGTTTGTATACCACAAGGAAATTTCCAAGCCTGTGACTTGGCATAGATTTGGCTCACCTGATATTGACGATGCCGAAGATGAGGCAGGGTCATACTTCATCAGTGCTGTATGCTGGAAGAGTGATAGCCCCACTATACTAACTGCAAATAGTCAAGGGACCATTAAGGTGCTGGTTCCTGCAGCTTGA 2127 0.4386 MDQLSAGPLVPAVKSDPSKPLAAASDTAAAAAADNYSSEPFMSEPDKDFLCPICMQIIKDAFLTACGHSFCYMCVSTHLRNKCDCPCCGQYLTSNQLFPNFLLDKLLKKTSACQMSKTASPVEHFRLSLQKGCDVTIKEVDSLLFILAEKKRKMEQEEAERNMQILLDFLYCLRKQKVEELKEVQTNLQFIKEDISAVDRHRMELYHARDRYSVKLRMLDESGSRKSWHSSMNKASSGMSSPLTMRGVLSSGSLPKKLDGKGQFNDLQECYLQKRRHPAEKPHSQQEKDKNVINREGYAPGLSEFQSVLTTFTQYSRLRVIAEVRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSTVVNEPSDAHCPVMEMSTRTKLSCLSWNKYAKNQIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTDPSMLVSGSDDCKVIQNIQLMFLLSSFVCLSMWFYEMLVTLIVGALDKKLSQDLAVTRWMREEGTVKVWCTKQEASVLNIDMKANICCVKYNPGSGNYIAVGSADHHIHYYDLRNISRPLHVFSGHRKTVSYVKFLSNNELASASTDSTLRLWDVKENIRALNQWFGDISLLKVSGYSEVRTFKGHTNEKNFVGLTVNSDYIACGSETNEVFVYHKEISKPVTWHRFGSPDIDDAEDEAGSYFISAVCWKSDSPTILTANSQGTIKVLVPAA 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0081 708 SMART WD40_4 372 411 IPR001680 GO:0005515
Lele27g0081 708 SMART WD40_4 612 651 IPR001680 GO:0005515
Lele27g0081 708 SMART WD40_4 666 705 IPR001680 GO:0005515
Lele27g0081 708 SMART WD40_4 507 548 IPR001680 GO:0005515
Lele27g0081 708 SMART WD40_4 414 452 IPR001680 GO:0005515
Lele27g0081 708 SMART WD40_4 552 590 IPR001680 GO:0005515
Lele27g0081 708 SMART WD40_4 317 361 IPR001680 GO:0005515
Lele27g0081 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 138 IPR013083 -
Lele27g0081 708 Coils Coil 174 194 - -
Lele27g0081 708 Pfam Zinc finger, C3HC4 type (RING finger) 51 88 - -
Lele27g0081 708 SUPERFAMILY RING/U-box 35 106 - -
Lele27g0081 708 SMART ring_2 51 88 IPR001841 -
Lele27g0081 708 Pfam WD domain, G-beta repeat 554 590 IPR001680 GO:0005515
Lele27g0081 708 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 559 592 - -
Lele27g0081 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE COP1 499 705 IPR042755 GO:0061630
Lele27g0081 708 SUPERFAMILY WD40 repeat-like 334 703 IPR036322 GO:0005515
Lele27g0081 708 CDD RING-HC_COP1 47 92 - -
Lele27g0081 708 ProSiteProfiles Trp-Asp (WD) repeats profile. 559 599 IPR001680 GO:0005515
Lele27g0081 708 ProSitePatterns Trp-Asp (WD) repeats signature. 577 591 IPR019775 -
Lele27g0081 708 Gene3D - 493 708 IPR015943 GO:0005515
Lele27g0081 708 Gene3D - 304 452 IPR015943 GO:0005515
Lele27g0081 708 ProSitePatterns Zinc finger RING-type signature. 66 75 IPR017907 -
Lele27g0081 708 ProSiteProfiles Zinc finger RING-type profile. 51 88 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0081 Lele-ChrLele27 646238 654310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0081 49 102 C3H Transcription Factor Family AT5G48655 37.037 4.86e-07 49.3