Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0050 ATGGATTTTGAACTGCGAAGAGCGAGAGAGAAACTAGAAAGAGAGCAGAAGGATAGGAAGGAGAGGGCTCGATTGAAATTGGAGAAGGAAAGGAAGGCTAAACAAGAGGCTAAGATTCAAAGGGATGCCATTGAAGCTGTTCAAAGATCTCGCCGTATTGATGCAGCCGAAGCCCAACTAAAGGCTGAGGAACAGATGCAAGAAAGCTTACTTGCTGGAAGAGGAATTGTGTTTTACCGTTTATTAGAAGCTGTACCTTGTCAAGTTAATGGTGATAAGATCAAACTGCCACCTTCATGCTTCACAGAATTGTCTGATCAGGGTGCCCTTGATAAAGGACCCATGTACTTTCAGTTGTCAATAGTTCATGAGGAGGGTTCTTCAGGCACAAAAGCTAGTGAGGAAGAGAAACGAGGGACCACCCATTCAGGAGTTTTAGAATTCACTGCTGATGAAGGTTCAGTAGGTCTTCCTCCTCATGTATGGAATAATTTGTTTGCTAACATCACCCCTACGTCTCCATTAGTTGAGGTCCGCTATGTTGGGCTTTCAAAGGGAACTTATGCAAAACTTCAACCTGAAAGGGTAGGATTTTCTGATTTGCCAAATCATAAGGCTATCCTTGAAACAAGTCTTCGGCAACATGCAACTCTTTCTCAAGGTGATATTTTAACAGTCAACTATGGGGAACTTGCATACAAATTGAGGGTGCTTGAATTGAAACCTTCTTCAAGTGTATCCGTCTTAGACACAGATATCGAAGTTGACATTGTCAATCCTGATACAAGCTCAGAAAAGAGAGATCAGCATGTTTTACTCCCGCTTGAATTTGGGGTGTCACAATCTGGAACGGTGGATGAAGGAAATTTTGTATACTACAAATTCTCAATAGACAATGGCAACTGGGAGAAAAACGTTTCTGAGAATTCCAGTATTGAGGTAAAATTGGAAGCTGAGACAGGTAGCGGAGACACTGATCTTTTTATATCTAGACATCCTCTGATATTTCCTACTAGACACCAGCATGAGTGGTCATCCCATGATGTTGGTTCCAAGGCTTTGTTTCTTAGCTCTAAAGATAAGAACTTTGGGGCTGGGACGTACAGCATTGGGGTATTTGGATTTAAGGGAACAACCAAATTCAAAATATCAGTGGCAATTCAGGAAATTTCCCACCAAAAAATTGGTCAACAAGCATCATCGTCTATGTCACATATGGAGACAGACACTGAACAGTGCTGGAATTGCAGGCATTACATACCTAGTAAGACTATTGCATTGCATGAAGCTTACTGTCGCAGACATAATGTTATATGTCAACATGCTGGTTGTGGAGTTGTTCTTAGGATTGAGGAGTCCAAGAACCACATTCACTGTGACAGGTGTGGTAAAGCTTTTCAGCAGGGAGAATTGGAAAAGCACATCAAGGTTTTCCACGAACCTCTTCACTGTCCTTGTGCTGTAGTCCTTGAGAAAGAACAAATGGTTGAACACCAAGCTTCAGAGTGTCCCCTGCGTTTAATTGCATGTCGCTTTTGTGGTGACATGGTTCAAGCAGGAAGCTCTGCTGTTGACATCCGTGACAAGATTAGAGGGTTAACTGAACATGAGAGTGTTTGTGGCTCAAGGACAGCCCCATGTGATTCTTGCGGGCGTTCAGTGATGTTGAAGGACATGGACATTCACCAGATTGCGGTTCATCAACGAGTCTAA 1713 0.4267 MDFELRRAREKLEREQKDRKERARLKLEKERKAKQEAKIQRDAIEAVQRSRRIDAAEAQLKAEEQMQESLLAGRGIVFYRLLEAVPCQVNGDKIKLPPSCFTELSDQGALDKGPMYFQLSIVHEEGSSGTKASEEEKRGTTHSGVLEFTADEGSVGLPPHVWNNLFANITPTSPLVEVRYVGLSKGTYAKLQPERVGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSSSVSVLDTDIEVDIVNPDTSSEKRDQHVLLPLEFGVSQSGTVDEGNFVYYKFSIDNGNWEKNVSENSSIEVKLEAETGSGDTDLFISRHPLIFPTRHQHEWSSHDVGSKALFLSSKDKNFGAGTYSIGVFGFKGTTKFKISVAIQEISHQKIGQQASSSMSHMETDTEQCWNCRHYIPSKTIALHEAYCRRHNVICQHAGCGVVLRIEESKNHIHCDRCGKAFQQGELEKHIKVFHEPLHCPCAVVLEKEQMVEHQASECPLRLIACRFCGDMVQAGSSAVDIRDKIRGLTEHESVCGSRTAPCDSCGRSVMLKDMDIHQIAVHQRV 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0050 570 Gene3D - 78 183 IPR042299 -
Lele27g0050 570 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 22 515 IPR004854 GO:0006511
Lele27g0050 570 Coils Coil 5 66 - -
Lele27g0050 570 Pfam Ubiquitin fusion degradation protein UFD1 90 260 IPR004854 GO:0006511
Lele27g0050 570 Gene3D - 279 391 - -
Lele27g0050 570 Gene3D - 185 258 - -
Lele27g0050 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 528 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0050 Lele-ChrLele27 397836 401584 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele27g0050 UFD1 1.2e-47 CL0402