Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0016 ATGGTTAGGGATTTATCCTATGGCAAGGTAGAAGAGGAACTGGACGAAGAACCAGCACAACCAAGACCAGCACACACGGATGAAGCAAAACGAGATGCAGAGCAAAGAAGGAGAAGGGTAGAAGAGGTTACCAATGAAACGAGAATGAAATGGGGCATTGGTGAGATGACACCCTGCATTTGACACGTGAACTATGGGAGCTTGAGGTTCAAAGCATTGGCAAAGGCTATGGAGGTTTTAAGAGAGGTTGAAGAGAGGAGATTGAAGAAGGTGCGAGAGAAGGCTTCTTATTTGCTTATGGGATACTCCACTCCATGTGCTAGAGAAGGCTTGAAGAGAGTTATCGAAAACGAATTTCCCTTCTCTCCTCCGCTTCCAACCCTAGCTCGTCTCCCAATACGCGAATCCACCGCCATGGCTAAGAAGCGAAAGCTTCGATCATCTGAACCCGAATCCGCCAAGATCTCGGATTCACAACCTGCACAACAAGAACAACCCCAAGAACAACAAATCCACGAGGAAGTTAGAGAGGACGAACAACCAAAGCCTGAAGCAACCCTAGAAGAAGAGCACCAGGGACATGAAACGATGGCCGTGGATGATGATACGCATCAGGAAGATGTACAATTAGAAGGAAACGAGGATGTAAGTGCACCTCCAGAAGTTCACCCTCAAGAGCAGGATAGCGAGCACCCCGAAACGGCGGAAGGTGCAGCTGATGCGGCGCCATCTGAATCAGCTCAGGCTGATGCGAATGGAGCCGAGGAAGGAAACGAGAACGATGATGATGTCGAGGTTTTGGACGAAGAGGAGCCTTTAGAGAAGCTTATTGAGCCTTTTACGAAGGAGCAGCTGTACACTCTTGTCAAGCAAGCTGCAGAGAAGTACCCAGATTTTATCGACAACGTCCGTCAGCTGGCGGACGTGGACCCCGCCCACAGAAAAATCTTCATCCACGGTCTTGGCTGGGACACTACTGCTGAAACCCTCACGAGTGTTTTTGGGAAATATGGCGAGATTGAGGATTGCAAGGCTGTCATCGATAGGGTTTCCGGGAAATCAAAAGGTTATGCCTTCATCCTGTTCAAGCATCGAAGTGGGGCTCGGAAGGCGCTGAAACAGCCACAGAAAAAGATCGGGAACCGAACCACATCGTGTCAATTAGCATCCGCGGGACCGGTCCCCTCGCCTGCTGCAGTGGCCCCGCCGTTATCTGAATATACTCAAAGGAAGATCTTTGTTAGCAATGTAAGTGCAGAAATCGATCCCCAAAAATTGCTTGAGTTTTTCGGTCAATTTGGGGAGATAGAGGATGGTCCTTTGGGTCTTGATAAACAGACGGGCAAGCCAAAGGGATTTGCATTGTTTGTATACAAGTCAGTAGAAAGTGCAAAGAAGGCTTTGGAAGAACCGCACAAAAATTTTGAAGGGCATACACTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCAGCATCACCAGCAGCAGCATCATTCTAATCATCATCAACCTCACTATCAGCCAAGAAAAGAGAAGAATAAGTATCAGTCTGGCGGGCATGGACCAGGACCCGGACACCTGATGGCACCCTCAGCTCCTTCTGTAGGTTTCAATCCTGGAGTGGCTGCACAGGGGCTAAATCCAGCCCTTGGTCAGGCCTTGACTGCTTTGCTTACTACCCAAGGTGCTGGGCTAGGGCTGGGTAACTTGCTTGGAGGTCTTGGTGGTGCACCCTCAAACCAGGCTGGGCCTCCTGCTGGATATGTCAATCAGCCTGCTGTGGGCTACGGGAACCAACCAGGAATGCAAGGGGGATACCAAAATCCACAAATGGGGCAGAGCGGTGGTGTTAGGCCTCATCCTGGCCCTGGCGCTCCTTACATGGGTCATTAG 1908 0.499 MVRDLSYGKVEEELDEEPAQPRPAHTDEAKRDAEQRRRRVEEVTNETRMKWGIGEMTPCIXHVNYGSLRFKALAKAMEVLREVEERRLKKVREKASYLLMGYSTPCAREGLKRVIENEFPFSPPLPTLARLPIRESTAMAKKRKLRSSEPESAKISDSQPAQQEQPQEQQIHEEVREDEQPKPEATLEEEHQGHETMAVDDDTHQEDVQLEGNEDVSAPPEVHPQEQDSEHPETAEGAADAAPSESAQADANGAEEGNENDDDVEVLDEEEPLEKLIEPFTKEQLYTLVKQAAEKYPDFIDNVRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVIDRVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPAAVAPPLSEYTQRKIFVSNVSAEIDPQKLLEFFGQFGEIEDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYQHHQQQHHSNHHQPHYQPRKEKNKYQSGGHGPGPGHLMAPSAPSVGFNPGVAAQGLNPALGQALTALLTTQGAGLGLGNLLGGLGGAPSNQAGPPAGYVNQPAVGYGNQPGMQGGYQNPQMGQSGGVRPHPGPGAPYMGH 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0016 635 MobiDBLite consensus disorder prediction 1 40 - -
Lele27g0016 635 MobiDBLite consensus disorder prediction 496 513 - -
Lele27g0016 635 MobiDBLite consensus disorder prediction 152 168 - -
Lele27g0016 635 CDD RRM_RBM24_RBM38_like 410 485 - -
Lele27g0016 635 Coils Coil 74 94 - -
Lele27g0016 635 Coils Coil 26 46 - -
Lele27g0016 635 MobiDBLite consensus disorder prediction 484 550 - -
Lele27g0016 635 MobiDBLite consensus disorder prediction 582 635 - -
Lele27g0016 635 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 218 498 - -
Lele27g0016 635 SUPERFAMILY RNA-binding domain, RBD 303 393 IPR035979 GO:0003676
Lele27g0016 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 410 488 IPR000504 GO:0003723
Lele27g0016 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 383 IPR000504 GO:0003723
Lele27g0016 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 412 480 IPR000504 GO:0003723
Lele27g0016 635 SUPERFAMILY RNA-binding domain, RBD 396 511 IPR035979 GO:0003676
Lele27g0016 635 MobiDBLite consensus disorder prediction 169 211 - -
Lele27g0016 635 Gene3D - 401 528 IPR012677 -
Lele27g0016 635 SMART rrm1_1 315 387 IPR000504 GO:0003723
Lele27g0016 635 SMART rrm1_1 411 483 IPR000504 GO:0003723
Lele27g0016 635 MobiDBLite consensus disorder prediction 119 273 - -
Lele27g0016 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Lele27g0016 635 Gene3D - 220 396 IPR012677 -
Lele27g0016 635 MobiDBLite consensus disorder prediction 255 272 - -
Lele27g0016 635 MobiDBLite consensus disorder prediction 136 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0016 Lele-ChrLele27 144244 151305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0016 389 489 C2H2 Transcription Factor Family AT2G19380 28.713 2.26e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g2060 25 27920710 27923954 Lele27g0016 27 144244 151305 hybridization
Lele26g2114 26 24171360 24174411 Lele27g0016 27 144244 151305 hybridization