Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0013 ATGGGAAACGCCAACGGCAAAGAAGATGGAGCCATTGGCAGCGATGATCGATCCGCCGCTGAATCTGGCATCCCTAGCAGTTTCGCGCCGACTTCTCAGCCTCCAGTTCGGGCTGCTTCAATCGATCCCATGGCGAATAGCCCGCCTCCTAGTCCTGGCCGATCTCGATCACCGGTCTTGTTCGCTCCTCAGTCTCCTCTAGCTCCACTGCAAAGAGGTAATGGCCCTCATTTTCTCAACCAAATGTGGCAGAATGAATTTCATGGGATTGTTGATCAATCTCCTGAGCGAGGAGTCCCTGTCATGATTACATGGAGTTATGGTGGAAACAATGTGGCTGCGCAGGGATCCTGGGATAATTGGACTTCGAGGAAGCAACTGCAGAGAGCTGGCAAGGATCATTCGATTGTTATGGTCCTCCCTTCTGGCATATATCATTACAAGTTCATTGTTGATGGTGAACAGAGATATATACCTGAACTTCCTTATGTAGCTGATGAGATGGGTTGTGTCTGCAATCTTCTTGATGTTGATGATTATGTACCTGAAATTCCCGAGAGTGTCAGTGAATTTGAGCCTCCACCCTCTCCAGAAGCCAGTTATGGCCAAGCGTTTCCAGCTGAAGAAGACTTTGCCAAAGAACCAATGGTGGTTCCTCAACAGCTGCATCTCACTGTCTTTGGTATGGAGAATTCAGATGTAGGTACCTCTTCAAAGCCTCAACACGTTGTGCTAAACCATGTTTTCATTGAAAAAAACTTGGCCGCCCAGTCTGTGGTTGCACTGGGACTGACTCACAGGTTCCAGTCCAAATATGTGACCGTTGTTCTCTACAAACCACTCAAAAGCTCTACTATTCCTTATCCTTCTGCATCTGGTCTAGTTGAAATTTCCGTGGCTTGCCTCGGATAA 912 0.4781 MGNANGKEDGAIGSDDRSAAESGIPSSFAPTSQPPVRAASIDPMANSPPPSPGRSRSPVLFAPQSPLAPLQRGNGPHFLNQMWQNEFHGIVDQSPERGVPVMITWSYGGNNVAAQGSWDNWTSRKQLQRAGKDHSIVMVLPSGIYHYKFIVDGEQRYIPELPYVADEMGCVCNLLDVDDYVPEIPESVSEFEPPPSPEASYGQAFPAEEDFAKEPMVVPQQLHLTVFGMENSDVGTSSKPQHVVLNHVFIEKNLAAQSVVALGLTHRFQSKYVTVVLYKPLKSSTIPYPSASGLVEISVACLG 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0013 303 Pfam Glycogen recognition site of AMP-activated protein kinase 99 178 IPR032640 -
Lele27g0013 303 SMART AMPKBI_2 194 281 IPR006828 GO:0005515
Lele27g0013 303 CDD E_set_AMPKbeta_like_N 100 177 - -
Lele27g0013 303 MobiDBLite consensus disorder prediction 20 34 - -
Lele27g0013 303 Gene3D Immunoglobulins 91 181 IPR013783 -
Lele27g0013 303 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 212 280 IPR006828 GO:0005515
Lele27g0013 303 MobiDBLite consensus disorder prediction 1 75 - -
Lele27g0013 303 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 282 IPR043554 -
Lele27g0013 303 SUPERFAMILY AMPKBI-like 181 281 IPR037256 -
Lele27g0013 303 Gene3D - 187 281 - -
Lele27g0013 303 SUPERFAMILY E set domains 97 178 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0013 Lele-ChrLele27 123736 128497 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0013 27 123736 128497 Lele01g1622 01 11265780 11266607 CCT
Lele27g0013 27 123736 128497 Lele02g1981 02 23449674 23452589 CCT
Lele27g0013 27 123736 128497 Lele03g1614 03 10539437 10540264 CCT
Lele27g0013 27 123736 128497 Lele04g1930 04 23800479 23801306 CCT
Lele25g2062 25 27933373 27937935 Lele27g0013 27 123736 128497 hybridization
Lele26g2117 26 24203845 24208929 Lele27g0013 27 123736 128497 hybridization