Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g2114 ATGGGCAGACACCTGAACTATGGGAGCTTGAGGTTCAAAGCATTGGCAAAGGCTATGGAGGTGTTAAGAGAGGTTGAAGATAGGAGATTGAAGAAGGTGCGAGAGAAGGCTTCTTATTTGCTTATGGGATACTCCACTCCATGTGCTAAGAGAAGGCTTGAAGAGAGGTTGAAGAAAGAAGGTCAGAGAAGGCGTAACTTAAAACGAATTTCCCTTCTATCATCCGCTTCCAACCTTAGCTCGTCTCCAAAACGCGAATCCACCGCCATGGCTAAGAAGCGAAAGCTTCGATCATCTGAACTCGAATCCGCCAAGATCTCGGATTCACAACCTGCACAACAAGAACAACTCCAAGAACAGCAAATCCACGAGGAAGTTAGAGAGGACGAACAACCAAAGCCTGAAGCAACCCTAGAAGAAGAGCACCAGGGTCATGAAACGATGGCCGTGGATGATGATACGCATCAGGAAGATGTAAAATTAGAAGGAAACGAGGATGTAAGTGCACCTCCAGAAGTTCACCCTCAAGAGCAGGATAGCGAGCACCCCGAAACGGCGGAAGCTGCAGCTGATGCGAATGGAGCCGAGGAAGGAAACGAGAACGATGATGATGTCGAGGTTTTGGACGAAGAGGAGCCTTTAGAGAAGCTTATTGAGCCTTTTACGAAGGAGCAGCTGTACGCTCTTGTCAAGCAAGCTGCAGAGAAGTACCCAGATTTTATCGACAACGTCCGTCAGCTGGCGGACGTGGACCCCGCTCACAGAAAAATCTTCATCCACGGTCTTGGCTGGGACACTACTGCTGAAACCCTCACGAGTGTTTTTGGGAAATATGGCGAGATTGAGGATTGCAAGGCTGTCATCGATAGGGTCTCTGGGAAATCAAAAGGTTATGCCTTCATCCTCTTCAAGCATCGAAGTGGGGCTCGGAAGGCGCTGAAACAGCCACAGAAAAAGATCGGGAACCGAACCACATCGTGTCAATTAGCATCCGCGGGACCGGTCCCCTCGCCTGCTGCAGTGGCCCCGCCGGTATCTGAATATACTCAAAGGAAGATCTTTGTTAGCAATGTAAATGCAGAAATCGATCCCCAAAAATTGCTCGAGTTCTTCGTTCAATTTGGGGAGATAGAGGATGGTCCTTTGGGTCTTGATAAACAGACGGGCAAGCCAAAGGGATTTGCATTGTTTGTATACAAGTCAGTAGAAAGTGCAAAGAAGGCTTTGGAAGAACCGCACAAAAATTTTGAAGGGCATACACTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCATCATCACCAGCAGCAGCATCATTCTCATCATCATCAACCTCACTACCAGCCAAGAAAAGAGAAGAATAAGTATCAGTCTGGCGGGCATGGACCAGGACCCGGACACCTGATGGCGCCCTCAGCTCCTTCTGTAGGCTTCAATCCTGGAGTGGCTGCACAGGGGCTAAATCCAGCCCTTGGTCAGGCCTTGACTGCTTTGCTTACTACCCAAGGTGCTGGGCTAGGGCTGGGTAACCTGCTTGGAGGTCTTGGTGGTGCACCCTCAAACCAGGCTGGGCCTCCTGCTGGATATGTCAATCAGCCTGCTTTGGGCTACGGGAACCAACCAGGAATGCAAGGGGGATACCAAAATCCACAAATGGGGCAGAGCGGTGGTGTTAGGCCTCATCCTGGCCCTGGCGCTCCTTACATGGGTCATTAG 1731 0.4991 MGRHLNYGSLRFKALAKAMEVLREVEDRRLKKVREKASYLLMGYSTPCAKRRLEERLKKEGQRRRNLKRISLLSSASNLSSSPKRESTAMAKKRKLRSSELESAKISDSQPAQQEQLQEQQIHEEVREDEQPKPEATLEEEHQGHETMAVDDDTHQEDVKLEGNEDVSAPPEVHPQEQDSEHPETAEAAADANGAEEGNENDDDVEVLDEEEPLEKLIEPFTKEQLYALVKQAAEKYPDFIDNVRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVIDRVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPAAVAPPVSEYTQRKIFVSNVNAEIDPQKLLEFFVQFGEIEDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHHHQQQHHSHHHQPHYQPRKEKNKYQSGGHGPGPGHLMAPSAPSVGFNPGVAAQGLNPALGQALTALLTTQGAGLGLGNLLGGLGGAPSNQAGPPAGYVNQPALGYGNQPGMQGGYQNPQMGQSGGVRPHPGPGAPYMGH 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g2114 576 MobiDBLite consensus disorder prediction 72 204 - -
Lele26g2114 576 MobiDBLite consensus disorder prediction 72 86 - -
Lele26g2114 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 332 IPR000504 GO:0003723
Lele26g2114 576 Coils Coil 50 70 - -
Lele26g2114 576 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 167 431 - -
Lele26g2114 576 MobiDBLite consensus disorder prediction 103 119 - -
Lele26g2114 576 MobiDBLite consensus disorder prediction 87 102 - -
Lele26g2114 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 324 IPR000504 GO:0003723
Lele26g2114 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 421 IPR000504 GO:0003723
Lele26g2114 576 Gene3D - 247 333 IPR012677 -
Lele26g2114 576 MobiDBLite consensus disorder prediction 427 478 - -
Lele26g2114 576 MobiDBLite consensus disorder prediction 545 576 - -
Lele26g2114 576 SUPERFAMILY RNA-binding domain, RBD 337 449 IPR035979 GO:0003676
Lele26g2114 576 SMART rrm1_1 256 328 IPR000504 GO:0003723
Lele26g2114 576 SMART rrm1_1 352 424 IPR000504 GO:0003723
Lele26g2114 576 MobiDBLite consensus disorder prediction 436 454 - -
Lele26g2114 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 429 IPR000504 GO:0003723
Lele26g2114 576 CDD RRM_RBM24_RBM38_like 351 426 - -
Lele26g2114 576 SUPERFAMILY RNA-binding domain, RBD 244 334 IPR035979 GO:0003676
Lele26g2114 576 MobiDBLite consensus disorder prediction 120 167 - -
Lele26g2114 576 Gene3D - 342 469 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g2114 Lele-ChrLele26 24171360 24174411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g2114 330 430 C2H2 Transcription Factor Family AT2G19380 28.713 2.09e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g2114 26 24171360 24174411 Lele27g0016 27 144244 151305 hybridization
Lele26g2114 26 24171360 24174411 Lele28g2113 28 23995543 23997036 hybridization