LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele26g2079	ATGGATTTTGAACTGCGAAGAGCGAGAGAGAAACTAGAGAGAGAGCAGAAGGATAGGAAGGAGAGGGCTCGGTTGAAATTGGAGAAGGAAAGGAAGGCTAAACAAGAGGCTAAGGTTCAAAGGGATGCCATTGAAGCTGTTCAAAGATCTCGCCGTATTGATGCAGCCGAAGCCCAACTAAAGGCTGAGGAACAGATGCAAGAAAGCTTACTTGCTGGAAGAGGAATTATGTTTTACCGTTTATTAGAAGCTGTACCTTATCAAGGTAATGGTGATAAGATCAAACTGCCACCTTCATGCTTCACAGAATTGTCTGATCAGGGTGCCCTTGATAAAGGACCCATGTACTTTCAGTTGTCAATAGTTCATGAGGAGGGTTCTTCAGGCACAAAAGCTACTGAGGAAGAGAACCGAGGGACCACTCATTCAGGAGTTTTAGAATTCACTGCTGATGAAGGTTCAGTAGGTCTTCCTCCTCATGTATGGAATAATTTGTTTTCTAACATCACCCCTAGGTCTCCATTAGTTGAGGTCCGCTATGTTGGGCTTTCAAAGGGAACTTATGCAAAACTTCAACCTGAAAGGGTAGGATTTTCTGATTTGCCAAATCATAAGGCTATCCTTGAAACAAGTCTTCGGCAACATGCAACTCTTTCTCAAGGTGATATTTTAACAGTCAACTATGGGGAACTTGCATACAAATTGAGGGTGCTTGAATTGAAACCTTCTTTAAGTGTATCTGTCTTAGAAACAGATATCGAAGTTGACATTGTCAATCCTGATACAAGCTCAGAAAAGAGAGATCAGCATGTTTTACTCCCGCTTGAATTCGGGGTGTCACAATCTGGAATGGTGGATGAAGGAAATTTTGTATACTACAAATCCTCAATAGACAATGGCAACTGGGAGAAAATCGTTTCTGAGAATTCCAGTATTGAGGTAAAATTGGAAGCTGAGACAGGTAGCGGAGACACTGATCTTTTTATATCTAGACATCCTCTGATATTTCCTACTCGACACCAGCATGAGTGGTCATCCCATAACGTTGGTTCCAAGGCTTTGTTTCTTAGCTCTAAAGATAAGAACTTTGTGGCTGGGACGTACAGCATTGGAGTATTTGGATTTAAGGGAACAACCAAATTCAAAATATCAGTGGCAATTCAGGAAATTTCCCACCAAAAAACTGGTCAACAACCATCATCGTCTATATCACATATGGAGACAGACACTGAACAGTGCCGGAATTGCAGGCATTACATACCTAGTAGGACTATTGCATTGCATGAAGCTTACTGTCGCAGACATAATGTTATATGTCAACATGCTGGTTGTGGAGTTGTTCTTAGGATTGAGGAGTCCAAGAACCACATTCACTGTGACAGGTGCGGTAAAGCTTTTCAGCAGGGAGAATTGGAAAAGCACATGAAGGTTTTCCACGAACCTCTTCACTGTCCTTGTGATGTAGTCCTTGAGAAAGAACGAATGGTTGAACACCAAGCTTCAGAGTGTCCCCTGCGTTTAATTGCCTGTCGCTTTTGTGGTGACATGGTTCAAGCAGGAAACTCTGCTGTTGACATCCGTGACAAGATTAGAGGGTTAACTGAACATGAGAGTGTTTGTGGCTCAAGGACAGCCCCATGTGATTCTTGCGGGCGTTCAGTGATGTTGAAGGACATGGACATTCACCAGATTGCGGTTCATCAACGAGGCTAA	1713	0.4279	MDFELRRAREKLEREQKDRKERARLKLEKERKAKQEAKVQRDAIEAVQRSRRIDAAEAQLKAEEQMQESLLAGRGIMFYRLLEAVPYQGNGDKIKLPPSCFTELSDQGALDKGPMYFQLSIVHEEGSSGTKATEEENRGTTHSGVLEFTADEGSVGLPPHVWNNLFSNITPRSPLVEVRYVGLSKGTYAKLQPERVGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSLSVSVLETDIEVDIVNPDTSSEKRDQHVLLPLEFGVSQSGMVDEGNFVYYKSSIDNGNWEKIVSENSSIEVKLEAETGSGDTDLFISRHPLIFPTRHQHEWSSHNVGSKALFLSSKDKNFVAGTYSIGVFGFKGTTKFKISVAIQEISHQKTGQQPSSSISHMETDTEQCRNCRHYIPSRTIALHEAYCRRHNVICQHAGCGVVLRIEESKNHIHCDRCGKAFQQGELEKHMKVFHEPLHCPCDVVLEKERMVEHQASECPLRLIACRFCGDMVQAGNSAVDIRDKIRGLTEHESVCGSRTAPCDSCGRSVMLKDMDIHQIAVHQRG	570

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele26g2079	570	PANTHER	UBIQUITIN FUSION DEGRADATON PROTEIN 1	22	515	IPR004854	GO:0006511
	Lele26g2079	570	Coils	Coil	5	66	-	-
	Lele26g2079	570	Gene3D	-	185	258	-	-
	Lele26g2079	570	Gene3D	-	76	183	IPR042299	-
	Lele26g2079	570	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	478	526	IPR013083	-
	Lele26g2079	570	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele26g2079	570	Gene3D	-	275	386	-	-
	Lele26g2079	570	Pfam	Ubiquitin fusion degradation protein UFD1	90	260	IPR004854	GO:0006511

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele26g2079	Lele-ChrLele26	23892436	23896342	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele26g2079		UFD1	4.4e-47	CL0402