Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g2045 ATGAAAGTGGAAGAACTCCAATTCGAGTTCGATCATCTCCCCCACCAGCAGCGGCAGAGTAAAGAGAAGACCCATTTGGGTGTCGCCGAACTCTTGCCTCCCATCGTCTCTGTCGATGATGATTGTGGTGGGTTTGACAAGGTCATTGATGGCGAAGACGAGGATTGTTTCGTCCAGCCTATCAATTTCGCGATGGTAGATAATGGCATTTTCCGGTCCGGCTTCCCTCAACCCGCCAACTTCTCCTTCCTCAAATCCCTCGGTCTCCGCTCCATCGTATATCTCTGTCCCGAGCCGTATTCGGAGGAAAGCTTAGAGTTCTTGAAGTCAAATGGGATCAAGCTTCATCAATTTGGGATTGATGGTCACAAGGAGCCTTTTGTAAGCATCCCAGAGGACACAATCTGTCAGGCCCTCAGAGTTGTCCTTGATGTGAAGAACCACCCAGTTTTAATTCACTGTAAACGGGGAAAGCACCGAACGGGTTGCGTGGTAGGCTGCTTCAGGAAGTTACAAAAATGGTGCTTGTCATCAGTGTTTGATGAGTACCTACGCTTTGCAGCAGCCAAGGCAAGAGTTGCAGATCTGAGGTTCGTGGAATCGTTTGATATTTCGAGCTTGTCGGCACATTTGCCCATGTCATTCTCATTCTCACAGTTGTGA 663 0.4872 MKVEELQFEFDHLPHQQRQSKEKTHLGVAELLPPIVSVDDDCGGFDKVIDGEDEDCFVQPINFAMVDNGIFRSGFPQPANFSFLKSLGLRSIVYLCPEPYSEESLEFLKSNGIKLHQFGIDGHKEPFVSIPEDTICQALRVVLDVKNHPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYLRFAAAKARVADLRFVESFDISSLSAHLPMSFSFSQL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g2045 220 CDD PFA-DSP_Siw14 57 203 - -
Lele26g2045 220 ProSitePatterns Tyrosine specific protein phosphatases active site. 152 162 IPR016130 GO:0016311|GO:0016791
Lele26g2045 220 ProSiteProfiles Dual specificity protein phosphatase domain profile. 62 215 IPR020422 GO:0006470|GO:0008138
Lele26g2045 220 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 58 202 IPR029021 -
Lele26g2045 220 PRINTS Plant and fungal dual specificity phosphatase signature 94 107 IPR020428 GO:0016791
Lele26g2045 220 PRINTS Plant and fungal dual specificity phosphatase signature 113 127 IPR020428 GO:0016791
Lele26g2045 220 PRINTS Plant and fungal dual specificity phosphatase signature 130 144 IPR020428 GO:0016791
Lele26g2045 220 PRINTS Plant and fungal dual specificity phosphatase signature 57 74 IPR020428 GO:0016791
Lele26g2045 220 Gene3D Protein tyrosine phosphatase superfamily 56 206 IPR029021 -
Lele26g2045 220 FunFam probable tyrosine-protein phosphatase At1g05000 56 206 - -
Lele26g2045 220 Pfam Tyrosine phosphatase family 58 208 IPR004861 -
Lele26g2045 220 PANTHER TYROSINE-PROTEIN PHOSPHATASE 48 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g2045 Lele-ChrLele26 23649246 23652737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g2045 55 219 Protein tyrosine phosphatase (PTP) family AT4G03960 68.485 7.82e-82 241