Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele26g2015 | ATGAAGATCAAAAGCTATAAAATGCAATCCGACAATGGCAAGTTATTTATTGGTGGGATATCATGGGACACAAATGAAGAGCGGCTTGGAGAGTATTTCAGTTCTTATGGGGAGATTGTGGAAGCAGTGATTATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTCGGTTTTGTAGTTTTTGCAGACCCAACTGTTGCAGAGAGAGTCATAAAAGAGAAGCACTGCATTGATGGAAGGATGGTCGAGGCCAAGAAGGCTGTTCCAAGGGATGACCAGAGCATACTGAGTAGAAACAGTGGTAGCAACCATGGTTCTCCTGGTCCAGGCCGCACGAAAAAGATATTTGTTGGTGGTTTAGCATCTACAGTTACAGAGAGTGATTTCAAGAAGTACTTTGAACAATTTGGGTCAATAACAGATGTTGTAGTTATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACCTTCCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGTGCAGTTCCTAAGGACCTATCACCTGGGCCAAACCAAAGCCCACTCGCTGGATATAACTATGGTATGAAAAGGGTCAATAGTTTCCTAACTGGCTTCACCCAGGGCTATACTCCAGGTGCTGTTGGAGGCTTTGGACTCAGGGTGGATGGTAGTTTCAGTCCTGTTGCAAGTGGCCGCAGTGGGTTTTCGCCATTTGGATCTGGTTATGGAATGAATATGAATTTTGAGCCTTGTTTGAGCCCTGGATTTCGAGGGAATGCAAATTTCAATAACAATCTTAGTTATGGTCGGGGAATAAATCCATATTATATTGGAAGCTCAAGTAGGTTTGGGAATCCTATTGGGTATGATGGTAATAATGGAGGAAACAATTCTTTCTTCAGCTCAGTAACTCGGAACTTGTGGGGAACTGGTAGCCTTAATTATGGAACAAGTTCTGCTAATTCCAATGCATACACAGGATCAGGAAGTGGGAATGTTGGAGGAAATATTTATGGCAATGCTGGAGTCAATTGGGGTTCTTCAGCAATTTCTGCTCAAGGTAAAATGAACAATGCTTCACAGAGTAGTGGTGGTAACCTTGGGTTTGGGGGAGATGACAATAGTTATGGTTTGGGAACTGGAGGGTATGGAAGAAACAGTGGTACAAATATTGCCCCAACATCATCACATTCTGCATCAAATGGTGGTTTTGATGGAGCTTTTGCTGATTTATACAATAATAGTTCAGTTTACGGAGACCCCACTTGGCGATCTTCAAATTCTGAGCTAGATGGATCTGGTCCCTTTGGTTATGTACTCGGTGCTGCAGCTTCAGATGTTTCTGCTAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGGTAATAAGAGACAGCCAAATAGGGGATAA | 1452 | 0.4291 | MKIKSYKMQSDNGKLFIGGISWDTNEERLGEYFSSYGEIVEAVIMKDRTTGRARGFGFVVFADPTVAERVIKEKHCIDGRMVEAKKAVPRDDQSILSRNSGSNHGSPGPGRTKKIFVGGLASTVTESDFKKYFEQFGSITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKDLSPGPNQSPLAGYNYGMKRVNSFLTGFTQGYTPGAVGGFGLRVDGSFSPVASGRSGFSPFGSGYGMNMNFEPCLSPGFRGNANFNNNLSYGRGINPYYIGSSSRFGNPIGYDGNNGGNNSFFSSVTRNLWGTGSLNYGTSSANSNAYTGSGSGNVGGNIYGNAGVNWGSSAISAQGKMNNASQSSGGNLGFGGDDNSYGLGTGGYGRNSGTNIAPTSSHSASNGGFDGAFADLYNNSSVYGDPTWRSSNSELDGSGPFGYVLGAAASDVSAKSSPGYVGGYTGNKRQPNRG | 483 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele26g2015 | 483 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 115 | 172 | IPR000504 | GO:0003723 | |
Lele26g2015 | 483 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 15 | 74 | IPR000504 | GO:0003723 | |
Lele26g2015 | 483 | MobiDBLite | consensus disorder prediction | 93 | 107 | - | - | |
Lele26g2015 | 483 | CDD | RRM1_hnRNPA_hnRNPD_like | 15 | 85 | - | - | |
Lele26g2015 | 483 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 89 | IPR000504 | GO:0003723 | |
Lele26g2015 | 483 | MobiDBLite | consensus disorder prediction | 88 | 112 | - | - | |
Lele26g2015 | 483 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 111 | IPR035979 | GO:0003676 | |
Lele26g2015 | 483 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 113 | 190 | IPR000504 | GO:0003723 | |
Lele26g2015 | 483 | CDD | RRM2_DAZAP1 | 111 | 190 | IPR034131 | GO:0003723 | |
Lele26g2015 | 483 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 8 | 482 | - | - | |
Lele26g2015 | 483 | SMART | rrm1_1 | 14 | 85 | IPR000504 | GO:0003723 | |
Lele26g2015 | 483 | SMART | rrm1_1 | 114 | 186 | IPR000504 | GO:0003723 | |
Lele26g2015 | 483 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 12 | 94 | - | - | |
Lele26g2015 | 483 | SUPERFAMILY | RNA-binding domain, RBD | 112 | 200 | IPR035979 | GO:0003676 | |
Lele26g2015 | 483 | MobiDBLite | consensus disorder prediction | 462 | 483 | - | - | |
Lele26g2015 | 483 | Gene3D | - | 11 | 95 | IPR012677 | - | |
Lele26g2015 | 483 | Gene3D | - | 110 | 196 | IPR012677 | - | |
Lele26g2015 | 483 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 110 | 197 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele26g2015 | Lele-ChrLele26 | 23441055 | 23445010 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele26g2015 | 15 | 176 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 30.409 | 5.16e-14 | 72.4 |