Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g2015 ATGAAGATCAAAAGCTATAAAATGCAATCCGACAATGGCAAGTTATTTATTGGTGGGATATCATGGGACACAAATGAAGAGCGGCTTGGAGAGTATTTCAGTTCTTATGGGGAGATTGTGGAAGCAGTGATTATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTCGGTTTTGTAGTTTTTGCAGACCCAACTGTTGCAGAGAGAGTCATAAAAGAGAAGCACTGCATTGATGGAAGGATGGTCGAGGCCAAGAAGGCTGTTCCAAGGGATGACCAGAGCATACTGAGTAGAAACAGTGGTAGCAACCATGGTTCTCCTGGTCCAGGCCGCACGAAAAAGATATTTGTTGGTGGTTTAGCATCTACAGTTACAGAGAGTGATTTCAAGAAGTACTTTGAACAATTTGGGTCAATAACAGATGTTGTAGTTATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACCTTCCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGTGCAGTTCCTAAGGACCTATCACCTGGGCCAAACCAAAGCCCACTCGCTGGATATAACTATGGTATGAAAAGGGTCAATAGTTTCCTAACTGGCTTCACCCAGGGCTATACTCCAGGTGCTGTTGGAGGCTTTGGACTCAGGGTGGATGGTAGTTTCAGTCCTGTTGCAAGTGGCCGCAGTGGGTTTTCGCCATTTGGATCTGGTTATGGAATGAATATGAATTTTGAGCCTTGTTTGAGCCCTGGATTTCGAGGGAATGCAAATTTCAATAACAATCTTAGTTATGGTCGGGGAATAAATCCATATTATATTGGAAGCTCAAGTAGGTTTGGGAATCCTATTGGGTATGATGGTAATAATGGAGGAAACAATTCTTTCTTCAGCTCAGTAACTCGGAACTTGTGGGGAACTGGTAGCCTTAATTATGGAACAAGTTCTGCTAATTCCAATGCATACACAGGATCAGGAAGTGGGAATGTTGGAGGAAATATTTATGGCAATGCTGGAGTCAATTGGGGTTCTTCAGCAATTTCTGCTCAAGGTAAAATGAACAATGCTTCACAGAGTAGTGGTGGTAACCTTGGGTTTGGGGGAGATGACAATAGTTATGGTTTGGGAACTGGAGGGTATGGAAGAAACAGTGGTACAAATATTGCCCCAACATCATCACATTCTGCATCAAATGGTGGTTTTGATGGAGCTTTTGCTGATTTATACAATAATAGTTCAGTTTACGGAGACCCCACTTGGCGATCTTCAAATTCTGAGCTAGATGGATCTGGTCCCTTTGGTTATGTACTCGGTGCTGCAGCTTCAGATGTTTCTGCTAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGGTAATAAGAGACAGCCAAATAGGGGATAA 1452 0.4291 MKIKSYKMQSDNGKLFIGGISWDTNEERLGEYFSSYGEIVEAVIMKDRTTGRARGFGFVVFADPTVAERVIKEKHCIDGRMVEAKKAVPRDDQSILSRNSGSNHGSPGPGRTKKIFVGGLASTVTESDFKKYFEQFGSITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKDLSPGPNQSPLAGYNYGMKRVNSFLTGFTQGYTPGAVGGFGLRVDGSFSPVASGRSGFSPFGSGYGMNMNFEPCLSPGFRGNANFNNNLSYGRGINPYYIGSSSRFGNPIGYDGNNGGNNSFFSSVTRNLWGTGSLNYGTSSANSNAYTGSGSGNVGGNIYGNAGVNWGSSAISAQGKMNNASQSSGGNLGFGGDDNSYGLGTGGYGRNSGTNIAPTSSHSASNGGFDGAFADLYNNSSVYGDPTWRSSNSELDGSGPFGYVLGAAASDVSAKSSPGYVGGYTGNKRQPNRG 483
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele26g2015 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Lele26g2015 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 74 IPR000504 GO:0003723
Lele26g2015 483 MobiDBLite consensus disorder prediction 93 107 - -
Lele26g2015 483 CDD RRM1_hnRNPA_hnRNPD_like 15 85 - -
Lele26g2015 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 89 IPR000504 GO:0003723
Lele26g2015 483 MobiDBLite consensus disorder prediction 88 112 - -
Lele26g2015 483 SUPERFAMILY RNA-binding domain, RBD 9 111 IPR035979 GO:0003676
Lele26g2015 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Lele26g2015 483 CDD RRM2_DAZAP1 111 190 IPR034131 GO:0003723
Lele26g2015 483 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 8 482 - -
Lele26g2015 483 SMART rrm1_1 14 85 IPR000504 GO:0003723
Lele26g2015 483 SMART rrm1_1 114 186 IPR000504 GO:0003723
Lele26g2015 483 FunFam Heterogeneous nuclear ribonucleoprotein 1 12 94 - -
Lele26g2015 483 SUPERFAMILY RNA-binding domain, RBD 112 200 IPR035979 GO:0003676
Lele26g2015 483 MobiDBLite consensus disorder prediction 462 483 - -
Lele26g2015 483 Gene3D - 11 95 IPR012677 -
Lele26g2015 483 Gene3D - 110 196 IPR012677 -
Lele26g2015 483 FunFam Heterogeneous nuclear ribonucleoprotein 1 110 197 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele26g2015 Lele-ChrLele26 23441055 23445010 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g2015 15 176 Eukaryotic Initiation Factors Gene Family AT2G36660 30.409 5.16e-14 72.4