Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g2014 ATGACATTCGAGAAAATTATCTATACAATGCAATCGGATAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACAAATGAAGAGCGACTTAGGGAGTATTTCAGTTCTTATGGAGAGGTTGTGGAAGCAGTTATAATGAAGGATCGGACAACTGGTAGAGCTCGTGGATTTGGTTTTGTAGTTTTTGCTGACCCAGCTGTTGCAGATAGAGTTATAAAAGAGAAGCACAACATTGATGGAAGGCTGGTTGAGGCAAAGAAGGCTGTTCCCAGAGATGACCAGAACATACTGAACAGAAGCAGCAGTAGCATCCAGGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTAGGAGGTTTAGCATCAACAGTTACGGAGAGTGATTTCAAGAAGTACTTTGATCAATTTGGGACAATAACAGATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACATTTCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGGGCAGTTCCTAAGGAATTATCAACAGGACCAAACCGCAGCCCAATCAGTGGATATAATTACTGTATGGGTAGGGTCAATAATTTCCTAAATGTCTTCACTCAGGGGTATACTCCAAGTGCTGTTGGAGGCTATGGACTGAGGATGGATGGTAGGTTCAGTCCTGCTGCAAGTGGTCGAAGTGGATTTGCTCCATTTGCATCTGGTTATGGAATGAGTATGAATTTTGAGCTTGGCTTGAACCCTGGATTTGGAGGGAATGCAAACTTCAATAGCAATCTTAGCTATGCTCGGGGATTAAATCCTTATTATGTTGGCAGCTCAAATAGATTTGGGAATCCTATTGGGTATGATGGTGGTAATGGAGGAAACAGTTCTTTCTTCAGCTCCGTGAGTCAAAACTTGTGGGGGACTGGTGGTCTTAATTATGGAACGGGTTCTGCAAATTCCAATAATGCGTACATGGGATCAGGAAGTGGGAATGCTGGAGGAAACTCATTTGGGACTGGAGTGAACTGGGGTTCTTCAGGAGTTTCTGGTCAAGGTGATTTGAACAACGTGTCACAGACTAGTGGCAACCTTCGCTATGCAGGGGGCGACAGTAGTTATGGTTTGGGTGCTGGAGGGTATGGAGGGAGAGGTGGTAGCAGTATTGGCCCAACGTCATCATACTCCTCATCAAATGGTGTGTTTGATGGGGCCTTTACTGATTTTTATAATAGTAGTTCAGTTTATGGGGATCCCACTTGGCGATCTTCAAATTCTCAGAGAGATGGCTCTGGTCCCTTTGGTTATGGTCTTGGTACTGCAGCATCAGATGTTTCTGCCAAAAGCTCTCCTGGTTATGTTGGTGGTTATACCGTTAATAAGAGACAGCCAAATAGAGGAATCACTACATAG 1464 0.4344 MTFEKIIYTMQSDNGKLFIGGISWDTNEERLREYFSSYGEVVEAVIMKDRTTGRARGFGFVVFADPAVADRVIKEKHNIDGRLVEAKKAVPRDDQNILNRSSSSIQGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSTGPNRSPISGYNYCMGRVNNFLNVFTQGYTPSAVGGYGLRMDGRFSPAASGRSGFAPFASGYGMSMNFELGLNPGFGGNANFNSNLSYARGLNPYYVGSSNRFGNPIGYDGGNGGNSSFFSSVSQNLWGTGGLNYGTGSANSNNAYMGSGSGNAGGNSFGTGVNWGSSGVSGQGDLNNVSQTSGNLRYAGGDSSYGLGAGGYGGRGGSSIGPTSSYSSSNGVFDGAFTDFYNSSSVYGDPTWRSSNSQRDGSGPFGYGLGTAASDVSAKSSPGYVGGYTVNKRQPNRGITT 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g2014 487 SMART rrm1_1 116 188 IPR000504 GO:0003723
Lele26g2014 487 SMART rrm1_1 16 87 IPR000504 GO:0003723
Lele26g2014 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 91 IPR000504 GO:0003723
Lele26g2014 487 Gene3D - 13 97 IPR012677 -
Lele26g2014 487 FunFam Heterogeneous nuclear ribonucleoprotein 1 112 199 - -
Lele26g2014 487 FunFam Heterogeneous nuclear ribonucleoprotein 1 14 96 - -
Lele26g2014 487 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 483 - -
Lele26g2014 487 CDD RRM1_hnRNPA_hnRNPD_like 17 87 - -
Lele26g2014 487 SUPERFAMILY RNA-binding domain, RBD 11 114 IPR035979 GO:0003676
Lele26g2014 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 78 IPR000504 GO:0003723
Lele26g2014 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 174 IPR000504 GO:0003723
Lele26g2014 487 Gene3D - 112 200 IPR012677 -
Lele26g2014 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Lele26g2014 487 MobiDBLite consensus disorder prediction 435 487 - -
Lele26g2014 487 CDD RRM2_DAZAP1 113 192 IPR034131 GO:0003723
Lele26g2014 487 SUPERFAMILY RNA-binding domain, RBD 108 212 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g2014 Lele-ChrLele26 23430755 23437037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g2014 17 194 Eukaryotic Initiation Factors Gene Family AT2G36660 31.217 9.55e-15 74.7