Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g2000 ATGTCTTCTTCTTCTTCTTCCTCCTCCTCTCGCGACTCTCCCATTATTCATCACCATAATGCTGGTGCTGCTGATCCTGGCCCTAGCTCATCATCAAGAACAATCGTCTCCGATTCCGACGAGCCCTCTTCGTCTCGTCCGCGTCTTGCCATGAATGATGTCTGGCCTGATCCTTTTCTTGAAGACTTAACCACCCAAGTCGCCATTGATGCTTCTCTCTCTTCTGGTCGTCTTTCTGCAGCTCCGGCACTCGCCAACTTGTTTCAGGTTTGTTCGAGGTGGCAGGCTGTTTCACGGTCGGATCGCCTGTGGCAGCGGCTCACCGAAGAGATATGGCGGCGAACAACTCAAGCGCGAGACACTTGGTACGAAGAGTTCATTCACCGACATCGAATCGCCAGGAATTTCGCCGTCGGCAGATACGCTTATTCCTCCTTACGGTTTGGCCCATCGGACATGGATGACGACCACTACGCCACCGTTATCTGCCGCTGTCTCACCCTCTCCGACGACTATCTCGCCTGTGGCTTCACCGATGGCACAGTCCGTCTCTTCCACCTCGATACTCGCGTCCACTTCAGGACTTACCGGACCCACCAAGCCAACCGTTTAGGTCCCTTCGCGAGATCCGTGTCGGGCATCGTGATGGCCGACAGCAGGCTCGCCTTCGCCACGCTGGACGGGGACATCTACGTGGCACACCTCGACGAGGCCGCCGATCACCCGCGTAGGGCCCGCATCGCTGACGTGGTCAACAGCGGAGTCCTCGTAGAGTTCGCGGGACGTGGCCGCTGGTGGGTCGGACTCTTTGCCGGAGTTCCTGGCCAGGCGTTTCAGATTTGGGACGCTGAAAACGAACAACTGGTGTTCATTGGAGGGTCCTTGACCGACCCGGAAACCGTCATGGGTTGGCACATGTTGACGGAGTTTGTCGAATCGGTGGGTCGTCTTCGGGTCACGGACGGAGGCTTGGCGGTGGCGTGTACGAGCTCACAACTCATAGTGTTCGACATGAACAACCAGATTCTTTTGCATGAGCTCTGGTCCTCTGTGGGCGGCTTCATGGTGACATCGATGGACGTGAGCCAGGAGGCGTTGTTTATCGTGGAAAGGAACGGCGACGCTAAGGTGCGCCATGCCAGCACATTAGAGCAAATATGTGAATTCCGGACACGTCCGGTTAGGGGTTTGTTGGGGTGTAAGAACATGGGGTACGCGCTAACATGCGCCGGCGGTGTGGTGAGGGTATGGGACGTTGAGCGACGGCGGGGTCGACGGTGTATGGTGTTGGGAGAGAAGGTGGGTGAGGCGATTGCCATGGTATGCACCGAGAGACACGTGGCCATTTCTTGTAATGACAGGTCGATACACCTATGGGATTTCGATGTATAA 1392 0.5647 MSSSSSSSSSRDSPIIHHHNAGAADPGPSSSSRTIVSDSDEPSSSRPRLAMNDVWPDPFLEDLTTQVAIDASLSSGRLSAAPALANLFQVCSRWQAVSRSDRLWQRLTEEIWRRTTQARDTWYEEFIHRHRIARNFAVGRYAYSSLRFGPSDMDDDHYATVICRCLTLSDDYLACGFTDGTVRLFHLDTRVHFRTYRTHQANRLGPFARSVSGIVMADSRLAFATLDGDIYVAHLDEAADHPRRARIADVVNSGVLVEFAGRGRWWVGLFAGVPGQAFQIWDAENEQLVFIGGSLTDPETVMGWHMLTEFVESVGRLRVTDGGLAVACTSSQLIVFDMNNQILLHELWSSVGGFMVTSMDVSQEALFIVERNGDAKVRHASTLEQICEFRTRPVRGLLGCKNMGYALTCAGGVVRVWDVERRRGRRCMVLGEKVGEAIAMVCTERHVAISCNDRSIHLWDFDV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g2000 463 SMART WD40_4 382 418 IPR001680 GO:0005515
Lele26g2000 463 SMART WD40_4 147 186 IPR001680 GO:0005515
Lele26g2000 463 SMART WD40_4 423 460 IPR001680 GO:0005515
Lele26g2000 463 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 148 462 IPR011047 -
Lele26g2000 463 Gene3D - 76 137 - -
Lele26g2000 463 Gene3D - 259 463 IPR015943 GO:0005515
Lele26g2000 463 Gene3D - 149 253 IPR015943 GO:0005515
Lele26g2000 463 MobiDBLite consensus disorder prediction 1 50 - -
Lele26g2000 463 PANTHER WD40 REPEAT PROTEIN 12, 37 26 422 - -
Lele26g2000 463 SUPERFAMILY F-box domain 83 131 IPR036047 GO:0005515
Lele26g2000 463 MobiDBLite consensus disorder prediction 25 46 - -
Lele26g2000 463 MobiDBLite consensus disorder prediction 1 15 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g2000 Lele-ChrLele26 23349070 23355335 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Lele26g2000 None None None