Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1993 ATGGCGGATTCGGATAACGATTCGGGTGGGGTGAACGGTGGCAACTCAAGCGATCTGTCGGCGAAGGAGCAGGACAGGTTCTTGCCGATAGCGAACGTGAGTAGGATAATGAAAAAGGCGTTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATAAGCTTCGTGACGGGGGAGGCGTCGGACAAGTGCCAGAGAGAGAAGAGGAAGACGATCAACGGCGACGATCTGCTGTGGGCCATGACCACTTTGGGCTTCGAGGATTATGTGGAGCCCTTGAAGATTTACCTACAGAAGTATCGGGAGATGGAAGGGGAGAAGACTTCCTTCGGGAAACACGGCGAGAAGGACGGTGGCTCCAGCGGAAGTGGGGTTGTTGGGTTTAGTGGCGCAGAGGGTATGTATGGTGGGATGTCGGTAGGGCATCATCAGGGACAGGTGTACGGTTCTGGTGGGTTTAACCAAGGCAACGGTGGTGGTGGAGGCTCCAATATGAGATCCAGTAAATTATCTAAATGTTGGATTGTCTGTGAAGAAGTTCTGAGGAAGACAGAATGA 588 0.5374 MADSDNDSGGVNGGNSSDLSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKYREMEGEKTSFGKHGEKDGGSSGSGVVGFSGAEGMYGGMSVGHHQGQVYGSGGFNQGNGGGGGSNMRSSKLSKCWIVCEEVLRKTE 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1993 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 142 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele26g1993 195 MobiDBLite consensus disorder prediction 1 23 - -
Lele26g1993 195 Gene3D Histone, subunit A 15 133 IPR009072 GO:0046982
Lele26g1993 195 FunFam Nuclear transcription factor Y subunit B-3 16 136 - -
Lele26g1993 195 SUPERFAMILY Histone-fold 24 132 IPR009072 GO:0046982
Lele26g1993 195 MobiDBLite consensus disorder prediction 1 22 - -
Lele26g1993 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Lele26g1993 195 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele26g1993 195 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Lele26g1993 195 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Lele26g1993 195 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1993 Lele-ChrLele26 23306087 23306813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1993 1 153 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.215 8.79e-77 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele26g1993 CBFD_NFYB_HMF 1.9e-27 CL0012