Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1973 ATGGGCCTCTCAAGTCTGCCAGCTCCATCTGAAGGAGTATTGTGTGTGCTTCTGGTTAACACTGCATTTTCCATATCCTTAGTTAAAGGCATTGTTAGAACAATCCTTCACATTATTGGTATCAGTCTTTCATCATCACCCACCACTCCATCACCATCATCATCAGAATCATCCCCTTCTCCATATATCTCTCAAGACCTGCCCGAGTCATTCCAATTCGACCTATGTTCGCCGGAGAATTACATTGAAGAGTTCAGAACCCGGACACCAACAATCCGGTATGACAGCGTGTGTGGCTGCAAACAACCCGAAGAACTTGACTGCTCTGTATGTCTGAGTCTATTTGAACCAGAATCTGAGATAAACCGCTTGTCCTGTGGCCATCTATTCCACAAAGATTGCTTGGAGAAGTGGCTGGCGTACTGGAACATTACATGCCCACTTTGCAGGACTCCTTTGTTGCCTGAAGAAGAGGTTTCTTCTTGCATTTGGTGA 495 0.4545 MGLSSLPAPSEGVLCVLLVNTAFSISLVKGIVRTILHIIGISLSSSPTTPSPSSSESSPSPYISQDLPESFQFDLCSPENYIEEFRTRTPTIRYDSVCGCKQPEELDCSVCLSLFEPESEINRLSCGHLFHKDCLEKWLAYWNITCPLCRTPLLPEEEVSSCIW 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1973 164 MobiDBLite consensus disorder prediction 44 63 - -
Lele26g1973 164 SUPERFAMILY RING/U-box 96 155 - -
Lele26g1973 164 SMART ring_2 108 149 IPR001841 -
Lele26g1973 164 Pfam Ring finger domain 107 150 IPR001841 -
Lele26g1973 164 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Lele26g1973 164 PANTHER - 1 158 IPR044249 -
Lele26g1973 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 158 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1973 Lele-ChrLele26 23156077 23156571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1973 1 164 C3H Transcription Factor Family AT2G04240 61.078 1.98e-61 185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1973 26 23156077 23156571 Lele27g0145 27 1144888 1145409 hybridization
Lele26g1973 26 23156077 23156571 Lele28g1976 28 22987195 22987710 hybridization