Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1972 ATGAATCTGTGGAGTCCTGTGTCTGTAACAGTTGAATTTGCAGCTACAAATATTGGACACATTGTTGGAGTTCTCTTGAGTTATAGCAACCTAAGAGTCAGCTTAAAGATGGGTTATATATGTGACTTTTGCGGAGACCAGAGGTCCATGGTGTACTGCCGTTCTGATGCTGCATGTTTATGTTTGTCATGTGACCGAAATGTTCATTCTGCTAATGCTCTTTCTAAGCGTCATTCGAGAACCCTTATATGTGAGAGATGTAATTCACAACCTGCTCTTGCACGTTGTTCTGAAGAGAGGATTACACTATGTCAGAACTGTGATTGGATAGGTCATGGTCCAAATACATCTTATTCAACACATAAGAGGCAAACGATCAATTGCTACTCTGGCTGTCCTTCAGCGGAAGAATTTTCTTCAATATGGCCATTTGTCTTGGATATCCCTTCCATGCGTGAAACTACCTGCGAGCAGGAACTAGGTTTGATGACCATTAATGAGAAGAGTGGCAAAAGTGCTTGTGTTCCTCCAGAAAGCCAGAATGCATCTGGTTCAGCTCAAGTAACTGATTTGCGCAGCTTCGATAAGTCTTGGGCCGGAGCCTCTGCAATACCTGAGTCAAGCTCAAAACCTCATATTCTAGGCCCATCAACTGGACCTACCAATGAAGGTTTGCCCAAGTTATCCTGTCCCAGTACAAAAGGTCCTGTGCCATATGAAAATGAAGATGATGACCTGTATGGTGATTTTGACATGGATGAAGTGGATATGAATCTTGAGAACTATGAGGAACTTTTTGGCATGACTCTTACTCATTCTGAAGAACTCTTTGAAAACGGTGGAATCGGTAGCTTGTTTGGGACAAAGGATGTGTCTGCTGCTGATTCCAATTGTCAGGGATCTATTGCTGCTGAGGGCTCACCGGTCAGACTGTTTAACGCGGTGCAACCAGCGTACAGCAATGCAGCATCTGCAGATTCTATTATGAGCACTAAAACTGAACCGATTCTTTGTTTCACGGGGAAGCAAGCACAATCGAATCTTTCTTTTTCAGGGGTCACGGGAGATAGTAATGCTGGAGATTATCAAGACTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCTTGGTGTCCTCCTTGTCCTGAGAATTCAATACAATCCGCCAACCGCAGCAACGCTGTCATGCGTTATAAGGAAAAGAAGAAGGCACGCAAGTTTGATAAAAAAGTGAGGTATGCCTCTCGCAAGGCAAGAGCCGATGTCCGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCTGGGGAAGCTTATGATTATGATCCTTTGAGCCCAACCAGAAGCTACTGA 1350 0.4459 MNLWSPVSVTVEFAATNIGHIVGVLLSYSNLRVSLKMGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLICERCNSQPALARCSEERITLCQNCDWIGHGPNTSYSTHKRQTINCYSGCPSAEEFSSIWPFVLDIPSMRETTCEQELGLMTINEKSGKSACVPPESQNASGSAQVTDLRSFDKSWAGASAIPESSSKPHILGPSTGPTNEGLPKLSCPSTKGPVPYENEDDDLYGDFDMDEVDMNLENYEELFGMTLTHSEELFENGGIGSLFGTKDVSAADSNCQGSIAAEGSPVRLFNAVQPAYSNAASADSIMSTKTEPILCFTGKQAQSNLSFSGVTGDSNAGDYQDCGASSMLLMGEPPWCPPCPENSIQSANRSNAVMRYKEKKKARKFDKKVRYASRKARADVRRRVKGRFVKAGEAYDYDPLSPTRSY 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1972 449 Pfam CCT motif 392 434 IPR010402 GO:0005515
Lele26g1972 449 CDD Bbox1_BBX-like 40 83 - -
Lele26g1972 449 SMART bboxneu5 36 83 IPR000315 GO:0008270
Lele26g1972 449 SMART bboxneu5 84 126 IPR000315 GO:0008270
Lele26g1972 449 ProSiteProfiles Zinc finger B-box type profile. 79 126 IPR000315 GO:0008270
Lele26g1972 449 CDD Bbox1_BBX-like 83 126 - -
Lele26g1972 449 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 38 437 - -
Lele26g1972 449 MobiDBLite consensus disorder prediction 202 239 - -
Lele26g1972 449 ProSiteProfiles CCT domain profile. 392 434 IPR010402 GO:0005515
Lele26g1972 449 MobiDBLite consensus disorder prediction 211 228 - -
Lele26g1972 449 ProSiteProfiles Zinc finger B-box type profile. 36 83 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1972 Lele-ChrLele26 23145250 23150679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1972 37 449 C2C2-CO-like Transcription Factor Family AT5G48250 58.314 8.18e-159 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele26g1972 CCT 5.5e-16 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1972 26 23145250 23150679 Lele27g0146 27 1154425 1158055 hybridization
Lele26g1972 26 23145250 23150679 Lele28g1975 28 22977565 22981411 hybridization