Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1964 ATGCAGCCATCTTCCTGTTCACAGGCTGAGCTTCCTACAGAGTTAAAAGTGGAAGATGGAGTTAAGATTGGGTTTTCTCTTTGTTCATCAGCAAAAAGTAACCGAGGCTCTTTGAAGAGGAAAGGAATTGGTGGTGGAAAATCAACATTGGACGAATTGATGCGGGAAGAAGAGAAGAAAAAGAAGATTAACAGAAAGGATTACTGGTTGCATGAGGGAATTGTTTTTAAGGTCATGACCAAAGCTTTGGCTGATAAAGGGTATTACAAGCAAAAAGGGGTTGTTTTAAATGTGATTGACAAATGGGTTGGGGAAATAAAAAAGCTTGACAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAGCTTCAAACTGTGATTCCACAAATTGGTGCTCCTGTCAAGATTGTAAATGGAGCGTATCGCGGATCTACGGCAAGATTGTTGGAGGTTGATATAGATCACTTTTGTGCCAAGGTGCAGATCAAGGAAGGTCCATATGTTGGCAGAATACTCCAGGAGGCGAAATATGAACACATCTCCAAAATAACCCATCCTCTATCGAAGATCAAAGGTTCTCTGGTCGGGGAATTGAATTTAAATTGGGATGGGAAAAAGGACTCTTTCCTGAGGAAACGCTGTTACTTCGACAAAGCCCGGGCTTGTTACCGGGAGCGAGGTTCCTCACCTCGTAAGTCAGATGTTAGGGAGAATGTTTCAAGAGGAAATATAAATAATGACGTGGATGAAGGTTCCAACAGAAGTTCTCATGATTATTTAGATGATGACGATATGTGTCGGAATTTTTTGGGCGGAAAAAGCTGTTTCTGTTGTAATGAAGATGGAGAACTGTTAGTTTGCGCTGAGAGAGATTGCCCTATTAGCCTCCATGCAAAATGTTTATGCATTGAACCTAAATTTGATGATAAGGGGAACTTCTACTGTCCCTATTGCTGGTACAAACGAGCATGGGCAGAGGCTCAGGAATCCAGGGAAAAGGCCTTTTTAGCAAAGAAAGACTTGTCTAAATTCTTCTTTAAGAATGGAATCACGAGCGGCAAACTCACGGAGAATGCTGTGGGAGTTAAGACAAGAGAGACCAAAGATGTCTCTGTTATGGGAAATGGGAGTGGTTTGGAGTATCATAATAATAGGCCAGGCAATAAGGGTGGTTTGGATATAGCCAATGCAAACTGCCGAGAAGTTAATACTGATGTTTCTAATGGACACTTGCATGATTATGTATTTTCCAATGGGATGCAAGGTGGTCTTGAAGTATATGTAGATAAGGGCAGGGTGAAAGATAGAGAAAAGATAGTCCAGAATGAATTAAATCTGTCTGCAACTGATTGTTCTGTTAGTGGAACTGGTGATTCAGATTCTGAGCCTCTGCCCATGAAGGAGAGTAGTGTAAAACAAGAAGGGGGGGAAAGGACATCATTGCGGCGGAAGAGTAGAACTGGGAGTAAAAATGCTTGTTACAAAAATGAAGAAGTTGCCAATTCTGAAACTTTAGAGCTACCTCAGAGGTCTTCTAGGCAGAGCAACAATCTGACTTTAGAAACTGGAAAGCGCAAGAGATTAAGTTGGACACTTGAAGAAGTAAATATGCTGCAGGAAGGAGTGTTCAGGTTCGGAATGGACCAGCCGCATATACCTTGGAAGAAAATTTTAGAATATGGTTCTCAAGTATTCCATAACAAGCGTAACACTCATGATCTGAAAGATAAATGGAAACATTTGAAGTCTGATAGAATATTTTTTTTCCTAGAGCAACTAAATAGCCTGTTTGGTATAGCATGGGAAGCGGATTTTGCTTCCAATACACAGGAAAATAGATATGTAATGGCTATTATACTCCTATTGACATTACGCAACCATGATTATCCCTTTTCATTACTTTATTTTACCCATAAGATGGAGCCGGAGTTAGTGGAGGCAGAGCTAGTTTTACCAACCTATCTCAGTTTTAAGCGGGTTCAAACATATGAGAAATATCCCAAAGGCCAAGCCCGAGGCCGGCACTGGAAACATCTTAAGCAGATTCTTCAAGCTGAGAACTACCAGAAGTACTCACCTGATGAACCCAATTATGTGAATATTGAGTCACCACCCTCTGTACATCCCTGCAAGAGAATTTGCGATATTACAGGCTTTGAGGCACCGTATTATGATCCCGTGACTAGACTACGGTATGCAAATACCGAAGTTTTCAAGGCTATCAGATCGCTTCCTAATGAGTATGTGCAGAGGTACTTGGCCTTGAGGAATGCTGCAGTTGTTCTGAAGTAA 2289 0.4142 MQPSSCSQAELPTELKVEDGVKIGFSLCSSAKSNRGSLKRKGIGGGKSTLDELMREEEKKKKINRKDYWLHEGIVFKVMTKALADKGYYKQKGVVLNVIDKWVGEIKKLDSKHVLRVDQAELQTVIPQIGAPVKIVNGAYRGSTARLLEVDIDHFCAKVQIKEGPYVGRILQEAKYEHISKITHPLSKIKGSLVGELNLNWDGKKDSFLRKRCYFDKARACYRERGSSPRKSDVRENVSRGNINNDVDEGSNRSSHDYLDDDDMCRNFLGGKSCFCCNEDGELLVCAERDCPISLHAKCLCIEPKFDDKGNFYCPYCWYKRAWAEAQESREKAFLAKKDLSKFFFKNGITSGKLTENAVGVKTRETKDVSVMGNGSGLEYHNNRPGNKGGLDIANANCREVNTDVSNGHLHDYVFSNGMQGGLEVYVDKGRVKDREKIVQNELNLSATDCSVSGTGDSDSEPLPMKESSVKQEGGERTSLRRKSRTGSKNACYKNEEVANSETLELPQRSSRQSNNLTLETGKRKRLSWTLEEVNMLQEGVFRFGMDQPHIPWKKILEYGSQVFHNKRNTHDLKDKWKHLKSDRIFFFLEQLNSLFGIAWEADFASNTQENRYVMAIILLLTLRNHDYPFSLLYFTHKMEPELVEAELVLPTYLSFKRVQTYEKYPKGQARGRHWKHLKQILQAENYQKYSPDEPNYVNIESPPSVHPCKRICDITGFEAPYYDPVTRLRYANTEVFKAIRSLPNEYVQRYLALRNAAVVLK 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1964 762 MobiDBLite consensus disorder prediction 448 490 - -
Lele26g1964 762 CDD KOW_KIN17 129 182 IPR041995 -
Lele26g1964 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 353 IPR013083 -
Lele26g1964 762 ProSitePatterns Zinc finger PHD-type signature. 274 317 IPR019786 -
Lele26g1964 762 SUPERFAMILY Homeodomain-like 524 583 IPR009057 -
Lele26g1964 762 FunFam DNA/RNA-binding protein KIN17, putative 127 183 - -
Lele26g1964 762 Gene3D - 529 590 - -
Lele26g1964 762 SUPERFAMILY FYVE/PHD zinc finger 273 322 IPR011011 -
Lele26g1964 762 ProSiteProfiles Myb-like domain profile. 521 581 IPR001005 -
Lele26g1964 762 Gene3D - 127 183 IPR014722 -
Lele26g1964 762 Pfam YL1 nuclear protein C-terminal domain 712 740 IPR013272 -
Lele26g1964 762 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 235 582 - -
Lele26g1964 762 CDD SANT_TRF 529 581 - -
Lele26g1964 762 Pfam KN17 SH3-like C-terminal domain 65 118 IPR041330 -
Lele26g1964 762 MobiDBLite consensus disorder prediction 464 483 - -
Lele26g1964 762 SMART YL1_C_2 711 740 IPR013272 -
Lele26g1964 762 MobiDBLite consensus disorder prediction 227 254 - -
Lele26g1964 762 Gene3D - 73 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1964 Lele-ChrLele26 23089610 23097589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1964 14 183 C2H2 Transcription Factor Family AT1G55460 54.500 3.08e-53 188