Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1962 ATGTCAAATCGAAGTGGCGGAAGGGACCGGTTTAGAAGGGATTACCCTTCTAGATTTGAAGATAAAGTCAACAGTGGGCGTAGCAACAGTAACAATCCCCCTTCCAGGCACATTTGGGTTGGGAATCTAGCACACAGTTTAACAGAGAATGAACTTGCTCGTCATTTTCTACAATTTGGACCGCTTGAAAGTGTTGCATTCCAGCCTGGTCGTAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCTATTGATGCTTTGAACGAACTTCAAGGTTTTCCTGTTGCAGGCAACCCGCTTAGAGTTGAATTTGCGAAGGCGGATAAGCCATCGTCACTAACACGTGATGAAGACTACTCTTGGGATGAACGAAGCTCAGGGAGAAGAGGATCTCCTTTCACTCAAAGAGAGTTTAGAGGACGCCATGGTAGTCCTGAGCCTCCATATTCCGACAAATCCAAGCTGACTGATAAAAACCCTGAACCCAGTGAGGTATTGTGGATAGGATTTCCATCTCAATTGAATGTGGATGAGCTAGCTTTGAGAAAGGCTTTTTCTCCATTTGGTGAGATTGAGAAGATTACCACATTTCCAGGTCGTAGTTATGCTTTCGTTCGTTTTAGGAGTCTAACATCAGCACGCAGAGCAAGAGATTCTCTGCAGGGGAAGTTATTTGGAAATCCACGTGTACATATTTGTTTTGCAAAGAGTGAAGCTGGTTCATCAAGCAGTGGGAGGTTTTCAATTAATACCCCTTCCTCCCCATTTTACTCATCAAGCGGTCATCATAGATCAACTGAGAACTTGAGACAAGATAGGAGTATTGCAGGCTTCGGTGGAGACCGTAGCGCTAGTCCCCCTAATATATTCCCAAGATGGGACTTGGCAGATTCTGATACTTATGATTTAGATATAAGGGGTTCTTCACGGTCTGGTGGAGTCAGTTCATATGAACAAAGGAGAGTTGGTGAAAAGTTGCCCCCACTTGGAGTACTACAAGACAGTTTTGGACACTCAATAAGTCCTAGAGATAGACAAGCTCATCTAGGTACTTTTCCTCAGAGATATGCTCAAAAACATGCATTATTTGAAGATCCACGGGACTTTCCAGATGATGTATATTATCATGACACTAAAAAACTGAAGACTGGATCTCTTCCTCCTGAAAAGGAGCTTCCGGAGTATTTTCTTTCAGATTTAGAAAGGCAGAGACGTACCCTCCCCAGGTTATTGACTGATTTTCCCCAACATGAGGTCCTTGATAAAAGAATTGATGCTGGGCCTGTTGTGCATAGACAAACTTTTGATCCAAGACCAAATTCCCCTTTTGCTCGGTCAGATAGGAGTGAGCGCTTGAAGCCTAGTGATAGTTTCCATGTGGGTCCCAGTGCTCTGCAATCGTATCCTATTGAGAAGAGTAGACTCACACCTGAACCTAGCAACTCATCTTTAACAGAGTGGAAATGGGAAGGAACCATTGCCAAAGGTGGAACACCTGTTTGTCGTGCTCGCTGCTTCCCTGTGGGAAAAGTTCTGGATATAATGTTACCTGAATTCTTGGATTGCACAGCGAGGACTGGTCTAGACATGCTTTCAAAGCATTATTACCAAGCGGCTGGTGCTTGGGTTGTTTTCTTTGTGCCTGGAAGCGATGTTGACATTGAATACTACAATGAATTCATGCATTACCTGGAGGAAAAGGGTAGGGCTGCTGTTGCTAAGATAGATGACAGGAATACCTTGTTTCTTGTACCTCCATCAGATTTCTCGGAGAAAGTATTGAAAGTACCTGGAAAGTTGAGCATGTCTGGTGTGGTTCTAAGGTTGGAGCACCCTGGTTCAACTCAAGGGTCCATGCACAATCAAAATGAAGCAAAAGATGGAAGGTTGTCGTCATATCATGCCGATACATTGTATCGAATGCCACCGATGCCATCAGATAGTAGTCCCCCACCATTTACATCCTTGCCATCATCCCTGCCTACTGCAGTTTCTGGTTCAGCTCATGCCATAGGTGGCCCATCTGGTTCTCATGATGGAAGAAGGGGGCACGATTATCCAGTTCAACAGCAGAACCATACATCTGGGCCAAATTGGTCTGCTAACAATCTTCAGACCCTGATCTCCAATAGAAATTTACCATTACAACTATCAAATGGTGCTGTTGAACCTCTTACTCAGGATCATCAGCTTAGTATTCAGAAGCCACTGGATTCTATATCTCTGCCTGGGGGATCCCTGCAACAAGAACAGCTCGCACAACTTGCAGCGTCTCTTCTTGAGCAGCAGAGGCAATCAGGAAGCGCTGTGAGTGTATCCATGTCGGATGATCCGAGGCAAACTCATAGAGTTAACGGGTCTGACACTTCCTCGAGACCATCCCAAAATTACGCGATTCAAGATAACTCAATGAATCCTGAACTTGCAACATCTCAGTATGAACGAGTCATACAACTTCAAAAGCAACAGCAGATGTCAAACGCGCCTCACGGATCACAGATGGTTCAAAGAGAGCCACAGAGAGCGGCCAACGGAAATCAGCAACTGCTAGCCGGTAGTAACTTACAGCAAGATACAGAAGCAGATCCACAGAAGCGTCTACAAGCGACGTTACAGTTGGCTGCAGTTCTTCTTCAGCAAATTCAGCAAGGAAAAGGAAGTTGA 2667 0.4477 MSNRSGGRDRFRRDYPSRFEDKVNSGRSNSNNPPSRHIWVGNLAHSLTENELARHFLQFGPLESVAFQPGRSYAFINFRRDEDAIDALNELQGFPVAGNPLRVEFAKADKPSSLTRDEDYSWDERSSGRRGSPFTQREFRGRHGSPEPPYSDKSKLTDKNPEPSEVLWIGFPSQLNVDELALRKAFSPFGEIEKITTFPGRSYAFVRFRSLTSARRARDSLQGKLFGNPRVHICFAKSEAGSSSSGRFSINTPSSPFYSSSGHHRSTENLRQDRSIAGFGGDRSASPPNIFPRWDLADSDTYDLDIRGSSRSGGVSSYEQRRVGEKLPPLGVLQDSFGHSISPRDRQAHLGTFPQRYAQKHALFEDPRDFPDDVYYHDTKKLKTGSLPPEKELPEYFLSDLERQRRTLPRLLTDFPQHEVLDKRIDAGPVVHRQTFDPRPNSPFARSDRSERLKPSDSFHVGPSALQSYPIEKSRLTPEPSNSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDIMLPEFLDCTARTGLDMLSKHYYQAAGAWVVFFVPGSDVDIEYYNEFMHYLEEKGRAAVAKIDDRNTLFLVPPSDFSEKVLKVPGKLSMSGVVLRLEHPGSTQGSMHNQNEAKDGRLSSYHADTLYRMPPMPSDSSPPPFTSLPSSLPTAVSGSAHAIGGPSGSHDGRRGHDYPVQQQNHTSGPNWSANNLQTLISNRNLPLQLSNGAVEPLTQDHQLSIQKPLDSISLPGGSLQQEQLAQLAASLLEQQRQSGSAVSVSMSDDPRQTHRVNGSDTSSRPSQNYAIQDNSMNPELATSQYERVIQLQKQQQMSNAPHGSQMVQREPQRAANGNQQLLAGSNLQQDTEADPQKRLQATLQLAAVLLQQIQQGKGS 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1962 888 Gene3D - 18 114 IPR012677 -
Lele26g1962 888 SUPERFAMILY RNA-binding domain, RBD 25 113 IPR035979 GO:0003676
Lele26g1962 888 MobiDBLite consensus disorder prediction 1 35 - -
Lele26g1962 888 MobiDBLite consensus disorder prediction 821 865 - -
Lele26g1962 888 CDD RRM3_Spen 38 107 - -
Lele26g1962 888 SMART rrm1_1 166 234 IPR000504 GO:0003723
Lele26g1962 888 SMART rrm1_1 37 104 IPR000504 GO:0003723
Lele26g1962 888 MobiDBLite consensus disorder prediction 638 703 - -
Lele26g1962 888 MobiDBLite consensus disorder prediction 108 159 - -
Lele26g1962 888 MobiDBLite consensus disorder prediction 109 126 - -
Lele26g1962 888 MobiDBLite consensus disorder prediction 767 802 - -
Lele26g1962 888 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 108 IPR000504 GO:0003723
Lele26g1962 888 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 238 IPR000504 GO:0003723
Lele26g1962 888 MobiDBLite consensus disorder prediction 135 159 - -
Lele26g1962 888 Pfam SPOC domain 483 598 IPR012921 -
Lele26g1962 888 SUPERFAMILY RNA-binding domain, RBD 155 239 IPR035979 GO:0003676
Lele26g1962 888 Gene3D - 151 245 IPR012677 -
Lele26g1962 888 MobiDBLite consensus disorder prediction 431 464 - -
Lele26g1962 888 FunFam RNA recognition motif (RRM)-containing protein 151 244 - -
Lele26g1962 888 MobiDBLite consensus disorder prediction 688 703 - -
Lele26g1962 888 PANTHER RNA RECOGNITION MOTIF-CONTAINING 31 882 - -
Lele26g1962 888 MobiDBLite consensus disorder prediction 1 21 - -
Lele26g1962 888 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 230 IPR000504 GO:0003723
Lele26g1962 888 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1962 Lele-ChrLele26 23073479 23082012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1962 28 237 Eukaryotic Initiation Factors Gene Family AT4G34110 23.318 1.71e-06 50.1