Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1917 ATGGAGGAGGAACGCCTCCCTCACTCTCTTATCTTCTCTTCTCCAGAAAGCGATTCAATGGAGTCAGAGGATAAGCATTCTTTGGATTCTAAGTCAGCCTGTGGATCAGCAGGTCCTTCTGGGATCTCTCCACTCAGTGTTGCTAAAAAAGTGGAAAGCAGTGCTTGGGGGATACCACATGGGGCTGGGGCACATCATGCATCTAGTGCTGCTAGCTTGTTTTCAAGTTCTCTGCCTGTTCTTCCACACGAAAAGTTGAATTTCCCTGATTCAGTGCTCTATGGCCCACCTTTTGATGATAACATGCCTATGTTTAATAAAGACCACAAAGAAGCTGAGGGGTATGATCCACTTGAAGATGTTGAAACCAATGCTATTGGAAACATGCTTCCTGATGATGAAGAAGAGCTATTAGCTGGGATAACAGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGAGGATTTGGATGACAATGATTTGTTTGATAGTGGAGGAGGGCTAGAAATGGATTTTGAGCCCCAAGAGAGTCTTAAGATTGGCATGTCAAAGATGAGCATTACTGATGGAGTTTCTTCAAATGGTATTGGTCATTACGTACTTCCAAATGGTGTGGGACCTGTGGCTGGGGAGCATCCCTATGGAGAACATCCATCAAGAACATTATTTGTGAGAAACATTAATAGTAACGTTGAGGATTCCGAATTAAGATTACTATTTGAGCAATATGGGGATATTAGAACTTTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGAGATGCTCGTACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGACAACCCCTCTGAAAAAGACATCAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGATGATCTTCGTATAATATTTGGGGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCGCATAAGAGACACCATAAATTTATTGAATTCTACGATGTTAGAGCAGCTGAGGCAGCACTTAAGGCATTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCCAGCCGTCCTGGCGGGGCACGAAGAAATTTGATGCAACAACTGAGTCAAGAGATGGACCTAGATGAAGCACGGACTTTTAGACATCAAGTAGGTTCACCATTGGACAATTCCCCTCCTGGTAACTGGTCACAATTTGGCAGTCCAGTCGAACATAGTTATTTAAGTTCTTTTAGCAAGTCTCCAGTAAATAGCAACCATTCATCTGGATTGGCCGCAATTCTCTCCCCTCATGCATCAAACTCTACAAAGATTGCTCCAATTGGCAAGGACTCAGGAAGAGTTAATAGTTCAAATCATATATTTACTAATGCAGTATCAACACAAGGAGTAGCTTTTCAGAATTCATTGTCCTTTCCCGAGTTAAAAGCAAATGCAAGTTCTAGACCCAATGCTACTTTTGGTGAATCAAGCGCAACTTCATCAAGCATCGGAACACTATCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTACTTCTTACACAGAGCATTCAAACACCTCTGCTTGGTCTTCTTCTTCTTCTGGGCTCCCTTTTACATCTATTGGTGAGAAGCAGGGTTTCCCATATGCTAACCGACACAGTTCCTTTCTTGGTTCCCGCTCCCATCATCATGTGGGATCTGCTCCTTCTGGCCTTCCTCTTGAAAGGCATTTTAACTATTTCCCAGAGTCACCAGAAACTTCTTTCATGAGTCCAGTTTCATATGGGAGTATAAATCACAGTGATGGGAGCTTTATGAACATTGGTGCTCGTGCAGCTACTGGGGTTATTGGCCTTTCAGGAAATACAACTGAAATTAATTCACCTAGTTTCAGGTTGATGTCACTGCCCAGGCATAGTTCCTTGTTTCTTGGAAATGGTTCTTATTCTGGAGCGGTTGCAAATAATGAGGGGTTTACTGAACGTGTTCAGAGTCGACGACCTGAAAATAATGTGACCCAAATTGATAGCAAGAAGCAGTATCAACTTGATCTAGACAAAATTATCAGTGAGGAAGATACAAGGACTACTTTAATGATTAAAAATATTCCTAATAAGTACACTTCGAAGATGCTGCTATCTGCAATTGATGAGAACCACCGGGCCACTTATGACTTTCTCTACTTGCCCATTGACTTTAAGAACAAGTGTAATGTGGGTTACGCTTTCATCAATATGGTGTCTGCTTCACATATTGTTTCCTTCTATAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGTGAAAAAGTTGCATCACTGGCTTATGCACGGATCCAGGGAAAGGCAGCACTTCTGACACACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGAGATGCAGGCCGATTCTCTTTCATTCAGAGGGCCAAGAGATTGTTGACCAGGAACCTTTCATATCCAGCAATTTGAACATTTGCATCCGTCAACCAGATGGGTCATACTCAGGTGATTTGTTGGAAAGCCCGAAGGGCGATTTGGATGACAAGCTGTAG 2607 0.4193 MEEERLPHSLIFSSPESDSMESEDKHSLDSKSACGSAGPSGISPLSVAKKVESSAWGIPHGAGAHHASSAASLFSSSLPVLPHEKLNFPDSVLYGPPFDDNMPMFNKDHKEAEGYDPLEDVETNAIGNMLPDDEEELLAGITDDFDLSRLPSQLEDLDDNDLFDSGGGLEMDFEPQESLKIGMSKMSITDGVSSNGIGHYVLPNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRLLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRIIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRNLMQQLSQEMDLDEARTFRHQVGSPLDNSPPGNWSQFGSPVEHSYLSSFSKSPVNSNHSSGLAAILSPHASNSTKIAPIGKDSGRVNSSNHIFTNAVSTQGVAFQNSLSFPELKANASSRPNATFGESSATSSSIGTLSGPQFLWGSPTTSYTEHSNTSAWSSSSSGLPFTSIGEKQGFPYANRHSSFLGSRSHHHVGSAPSGLPLERHFNYFPESPETSFMSPVSYGSINHSDGSFMNIGARAATGVIGLSGNTTEINSPSFRLMSLPRHSSLFLGNGSYSGAVANNEGFTERVQSRRPENNVTQIDSKKQYQLDLDKIISEEDTRTTLMIKNIPNKYTSKMLLSAIDENHRATYDFLYLPIDFKNKCNVGYAFINMVSASHIVSFYKEFNGKKWEKFNSEKVASLAYARIQGKAALLTHFQNSSLMNEDKRCRPILFHSEGQEIVDQEPFISSNLNICIRQPDGSYSGDLLESPKGDLDDKL 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1917 868 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 379 IPR000504 GO:0003723
Lele26g1917 868 Gene3D - 210 304 IPR012677 -
Lele26g1917 868 CDD RRM2_MEI2_like 305 375 - -
Lele26g1917 868 SUPERFAMILY RNA-binding domain, RBD 218 381 IPR035979 GO:0003676
Lele26g1917 868 SUPERFAMILY RNA-binding domain, RBD 713 798 IPR035979 GO:0003676
Lele26g1917 868 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 373 IPR000504 GO:0003723
Lele26g1917 868 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 287 IPR000504 GO:0003723
Lele26g1917 868 SMART rrm1_1 713 789 IPR000504 GO:0003723
Lele26g1917 868 SMART rrm1_1 307 375 IPR000504 GO:0003723
Lele26g1917 868 SMART rrm1_1 222 290 IPR000504 GO:0003723
Lele26g1917 868 MobiDBLite consensus disorder prediction 1 44 - -
Lele26g1917 868 CDD RRM1_MEI2_like 220 296 IPR034453 -
Lele26g1917 868 Pfam RNA recognition motif 2 711 807 IPR007201 -
Lele26g1917 868 PANTHER RNA RECOGNITION MOTIF-CONTAINING 29 828 - -
Lele26g1917 868 FunFam Protein MEI2-like 1 305 400 - -
Lele26g1917 868 FunFam MEI2-like protein 5 isoform 2 210 304 - -
Lele26g1917 868 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 294 IPR000504 GO:0003723
Lele26g1917 868 Gene3D - 305 402 IPR012677 -
Lele26g1917 868 CDD RRM3_MEI2_like 714 799 IPR034454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1917 Lele-ChrLele26 22772811 22779640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1917 218 372 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 6.77e-11 64.3