Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1906 ATGGTTGGTGGCGAAGTACTGAAAATACCAAAGGAAACTTGGCTTGTATCTTCAGAAGAAGAAGGTGGTAGTGGTGGTGGAACAATCATTGATTCTGGCACTACTCTGACTTATTTTGCAGAGCCTGCTTATGATATTATCAAGGAGGCTTTCATGGAGAAGATAAAGGGCTACCCAATGGTTGAAGAAGGGGTTGTTCCATTAAAGCCATGTTATAATGTTTCTGGGTTTGAAGCTATTGAGTTGCCTGATTTTGGGATATTGTTTGAAGATGGAGCTGTTTGGGATTTCCCTGTGGAGAATTACTTCATTGAGATTGAACCAGGTGGTGTTGTTTGTTTGGCAATTCTGGGCACTCCTCATTCAGCTCTCTCCATAATTGGCAACTATCAGCAGCAGAACTTTCACATTCTCTATGATCTCAAGAATTCCAGACTTGGATATGCACCAGTGAATTGTGCTGATTTGTGCTTCTTCCCCTTGCGTTCATTGTCCCAAATGGTTTCCTTCAGGTTTCACCAGTACCAGGTTGTGGGAAGGGCCCTTCCCACAGAGACAGATGAGCACCCCAAGATCTACCGTATGAAGCTTTGGGCCACCAATGAAGTCCGTGCCAAATCCAAGTTCTGGTATTTCCTGAGAAAGCTGAAGAAGGTGAAGAAAAGCAATGGGCAAGTGCTAGCCATTAACGAGATTTATGAGAAAAACCCTACCAAGATTGATAACTATGGAATTTGGCTGCGATATCAAAGCCGAACAGGTTATCATAACATGTACAAGGAATACCGAGATACCACCCTCAATGGTGCCGTTGAACAAATGTACACTGAAATGGCATCGCGTCACCGGGTGAGGTTTCCATGCATCCAGATCATCAAGACAGCCACCATCCCTGCAAAGCTGTGCAAAAGAGAGAGCTCCAAGCAGTTCCACAATTCTAAAATCAAGTTCCCATTGGTGTACAAGAAGGTTAGGCCGCCAAGTAGGAAGCTGAAGACAACATACAAGGCATCAAGGCCCAACTTGTGGACCTACTAA 1038 0.4432 MVGGEVLKIPKETWLVSSEEEGGSGGGTIIDSGTTLTYFAEPAYDIIKEAFMEKIKGYPMVEEGVVPLKPCYNVSGFEAIELPDFGILFEDGAVWDFPVENYFIEIEPGGVVCLAILGTPHSALSIIGNYQQQNFHILYDLKNSRLGYAPVNCADLCFFPLRSLSQMVSFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIYEKNPTKIDNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVYKKVRPPSRKLKTTYKASRPNLWTY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1906 345 FunFam Aspartyl protease family protein 1 156 - -
Lele26g1906 345 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 173 294 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lele26g1906 345 Gene3D - 237 309 - -
Lele26g1906 345 FunFam 60S ribosomal protein L18a 167 237 - -
Lele26g1906 345 Gene3D - 162 236 - -
Lele26g1906 345 Pfam Xylanase inhibitor C-terminal 2 149 IPR032799 -
Lele26g1906 345 SUPERFAMILY RplX-like 237 312 - -
Lele26g1906 345 ProSiteProfiles Peptidase family A1 domain profile. 1 149 IPR033121 -
Lele26g1906 345 FunFam 60S ribosomal protein L18a 238 313 - -
Lele26g1906 345 PANTHER 60S RIBOSOMAL PROTEIN L18A 169 343 IPR028877 -
Lele26g1906 345 SUPERFAMILY Acid proteases 2 156 IPR021109 -
Lele26g1906 345 Gene3D Acid Proteases 1 159 IPR021109 -
Lele26g1906 345 Hamap 50S ribosomal protein L18Ae [rpl18a]. 172 235 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1906 Lele-ChrLele26 22655840 22660728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1906 163 343 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 89.503 2.90e-120 344