Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1868 ATGAGCGCACAGGATCATTACCTTAAATATCTTCTCCGCCCGCATAAACCCTTTAGTTTCTCGAGGTTCTTACGGTCATCCCTCCTGCTCCATTCCCATAAACCCTATAACCCGTTTGTTCCCATAAACCCCATAACCCCTTTGACTAGGGTTCTCACTTCTCTCTGCGAATCCCATTTCCTCCTTTCTCTTCCTTCGATCTCCGAAGCCACCATGATTAGTACAATTTTTTTCAGAAGATCTTGTTCCTTAGTCTCAAGGCGCGCTTTCGCCGCCTCCACGTTGATCCAGTATCAGCACCATCTCACCTCATCAGTCGCCAGCTATGGTGCGGTTGCCGGTAGTGAGATTCAGCCATTCTCCAACTTGTTTGGTTCCGGTGGGTTCAAGTCAAGCGCATTTCATTCACAAGCGGGGCCGTTGAATTTCCGGGTGTCGTTGGTTTCTCGTGCCGAGTATGCTGTTGATGATTGCCCCTTCGAAGAAGGGCCCAAGGGAAACAATGATGATGGCCTTGATATAGGGAAGCTCGGTATTGCTCAGGATATTGTCTCTGCTTTGGCCCAGAGAGGTATATCGAAGCTCTTCCCCATACAGAGAGCTGTACTGGAACCTGCCATGCAAGGTCGTGATATGATTGGTCGAGCTAGGACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCTATCATGGACAAGATCATTCAGTATAATGCTAAGCATGGACGAGGAAGGGATCCTCTTGCTTTGGTTTTGGCCCCGACTAGAGAACTTGCTCGGCAGGTTGAAAAGGAATTCGCTGAGTCAGCACCTAATTTGGATACAATTTGTGTTTATGGGGGAACACCCATTTCGGTCCAAATGAGGCAGCTTGACTATGGTGTCGATATTGCAGTTGGCACACCTGGTCGAATTATTGATCTTCTTAATAGAGGTGCTCTAAATTTGAAGGACATTCAGTTTGTTGTTCTTGATGAAGCAGATCAGATGCTTCAAGTTGGCTTTCAGGAAGATGTTGAAAAAATCTTGGAGAGGTTGCCTCCCAAACGCCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAGGCAGATTTCTCGCAATTACTTAAATGATCCATTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACGTTATACTCAATTGCCTCAGATATTTATGGAAAAGCAGGAATTATTGAAACTCTAGTAACTGAACATGCTAAAGGAGGAAAGTGTATTGTTTTCACCCAAACCAAACGCGATGCTGATCGACTATCAAATTCCATGTCAAGAAGCCTTAGGTGTGAGGCCTTGCATGGAGATATCTCACAAGCTCAGAGGGAAAGAACTCTTTCTGGCTTTAGAGAAGGCCATTTCAATGTTTTAGTAGCGACTGATGTTGCTTCACGTGGGCTTGACATACCGAATGTTGACCTTGTGATACATTTTGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCAGGACGGACTGGTCGAGCTGGGAGGAAAGGAATTGCTATCCTTATTTATACTCAAGATCAAACCAGAGCTGTCAAGATTATTGAGCGTGATGTTGGCTGCAGATTTTCTGAGCTACCGAGAATTACTGTTGAAGGTAAATCAGTAGGCATGTTTAATAGCATGGGTGGTGGCCGATTTAGCAATTCTGGAGGTATGCGGGATCGTAGATTTGGTGATTCAGGTTTTGGCCGTGGTTCTGGATTTGGCCGCTCCAGCTTTGGTAATTCTGATGAGAGGGGAAGGTATGGTGGACCTAAATCAAGTCAACCACGAAGTGGGTTTGGGGGATCATTTGGTAATTCTTCAGGTGAAAGCTCTGGTCGTTATGGTTCCTTTGGCTCTAGACCATCAGACAGTGGCTTTGGCAGATCTAGCGTAGATCGGTCAGGAAGCACTGGAGGATTTGGGTTTAGTCGTCCAAGTGGAGGCACTGGATTTGGATTTGGTGGTTCGGATCGTTCTGGTGGTTTTGGCTTGGGTCAATCTAGTGGATTTGGGAATGACCAGAATAATGATCAGAACAGTGGGAGAAGGCGCTTCTGA 2094 0.4542 MSAQDHYLKYLLRPHKPFSFSRFLRSSLLLHSHKPYNPFVPINPITPLTRVLTSLCESHFLLSLPSISEATMISTIFFRRSCSLVSRRAFAASTLIQYQHHLTSSVASYGAVAGSEIQPFSNLFGSGGFKSSAFHSQAGPLNFRVSLVSRAEYAVDDCPFEEGPKGNNDDGLDIGKLGIAQDIVSALAQRGISKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQYNAKHGRGRDPLALVLAPTRELARQVEKEFAESAPNLDTICVYGGTPISVQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDIQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIRQISRNYLNDPLTIDLVGDSDQKLADGITLYSIASDIYGKAGIIETLVTEHAKGGKCIVFTQTKRDADRLSNSMSRSLRCEALHGDISQAQRERTLSGFREGHFNVLVATDVASRGLDIPNVDLVIHFDLPNNSEIFVHRSGRTGRAGRKGIAILIYTQDQTRAVKIIERDVGCRFSELPRITVEGKSVGMFNSMGGGRFSNSGGMRDRRFGDSGFGRGSGFGRSSFGNSDERGRYGGPKSSQPRSGFGGSFGNSSGESSGRYGSFGSRPSDSGFGRSSVDRSGSTGGFGFSRPSGGTGFGFGGSDRSGGFGLGQSSGFGNDQNNDQNSGRRRF 697
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1868 697 MobiDBLite consensus disorder prediction 673 690 - -
Lele26g1868 697 CDD DEADc 183 378 - -
Lele26g1868 697 FunFam ATP-dependent RNA helicase RhlE 165 380 - -
Lele26g1868 697 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 377 IPR014001 -
Lele26g1868 697 SMART helicmild6 431 511 IPR001650 -
Lele26g1868 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 532 IPR027417 -
Lele26g1868 697 MobiDBLite consensus disorder prediction 556 697 - -
Lele26g1868 697 Pfam Helicase conserved C-terminal domain 406 511 IPR001650 -
Lele26g1868 697 CDD SF2_C_DEAD 413 520 - -
Lele26g1868 697 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 550 IPR001650 -
Lele26g1868 697 Pfam DEAD/DEAH box helicase 196 363 IPR011545 GO:0003676|GO:0005524
Lele26g1868 697 Gene3D - 392 551 IPR027417 -
Lele26g1868 697 SMART ultradead3 191 394 IPR014001 -
Lele26g1868 697 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 175 552 - -
Lele26g1868 697 Gene3D - 174 381 IPR027417 -
Lele26g1868 697 MobiDBLite consensus disorder prediction 607 655 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele26g1868 Lele-ChrLele26 22337320 22341635 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1868 177 543 Eukaryotic Initiation Factors Gene Family AT3G19760 33.602 4.51e-69 230