Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1865 ATGGCTTTCTTCAGGAACTTTTCAAATGAAACAGTTTCACATAGTATCCTGGAAGAAAAAGGCCAAGGACAAAATGCTGATAGGATCCATAAATCAATTGGCAATGAATGTGGTGATGCATCTTCAAGTGAGAAAGAGTTTGATATGAACATGGATGCTCAGTATCATAGTGATGGTGAACCAGATGGTAGACTGCAAAATGATGCTACAGCTGATGGTGTTGGTAACATCCAGTCTACTGGAAGTAAAACTGCTATGGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCCAGCCTATGAGCCATCAGAATAGGCAGGAATATGGGCAAGAATCACCAAGTGGATCGGACTATAGAAATGCAGAAGGGGCTGAAGATAATTCATCAGATGGAAGAGGGGAAAGATTAGATTCAGAAGATGATGATGGACAGAAAGAAGCAGGAAAAGGTCCAAGAGGCAATTCTGATGTGCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGAAGAGCACAGTGATTCATTGCATTACAGGGGGATTCATCAAAAAACTGGATCAAGTTCATGGCCTCAACAGATGTCTAATGCTGTCAATAGTCGTGCAAATAGGAATTCTAGGATTTCAGATGTGGTTGAAGATGATGATGGTGGTGATGATAATGATAATGATGATGGTGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGTGGACTTTGAGCCTGCAACAAGTGGTCGTTCTGCAAACAAGGATAGAGATTGTGAGGGTGAAGAATCAGATGAAGATGATGATAGTGATGAGAATCTAGATGTTTCGGATGACGATGATACCAACTATGCAAGAAAACCTTCGGGTAGGCGATGTGGCAAAGTGGGACGAACTGTAAAACCTACTAGAGAACGCAAATCATTTGCTGTATCAGGTCGGCAAAGAAAACCTAAAACATCTTTTGAAGAGGATGAGTCAACAGCAGAGGATTCTGAGAGTGAAAGTGATGATGATTTCAAAAGCATGAGAAAGAGAGGTGCAAATGCTCGCAAGAATAATGACTGTTCTTCTGCAGCTGCAAGTTTTTCTGGACGGAACAGTGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAGAAGGTGTCTTATGTTGAAAGTGAAGAAAGTGAAGAAGCAGATGAAGGGAAGAAGAAGAAGTCCCAAAAAGAAGAACTTGAAGAGGAAGATGGTGACTCCATTGAGAAGGTGCTTTGGCATCAGCCAAAGGGCACGGCTGATGAGGCGCAGAGGAATAATAGATCTACAGAACCTGTTTTATGGAGTAATTTGTTTGATTCTGTACCTGATTGGAATGAGATGGAATTCTTAATAAAATGGAAAGGCCAGTCCCATTTGCACTGTCAATGGAAGTCGTTTGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTAAATTATACGAAGAAAGTGACGGAGGACATCAGGTACAGGAACACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAACAGTCAGGTGGAAAGAATAATTGCAGATAGAATCAGCAAAGATAGTTCTGGCAATGTTAATATAGAATATTTGGTCAAGTGGCAAGGGCTGTCTTATGCTGAAGTGACTTGGGAGAAGGACACAGATATTGCTTTTGCTCAGCATGCTATTGATGAGTACAAGGCTCGTGATGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATCTACAACGCAAGAAGAGTAAAGCAAGTTTGAGAAAGCTTGATGAACAGCCTCAGTGGTTGAAGGGTGGGAAGCTTCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGACACAAATGTTATTTTAGCTGATGAAATGGGGCTTGGCAAAACTGTTCAGTCAGTGTCAATGCTTGGTTTTCTTCAGAATGGCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCTTTGTCTACTTTGTCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCGTATATGTTGGTAATCGATCAGGGCGAGAGGTTTGTCAACAGTATGAATTTTATAATGATAAAAAGGCTGGCAGGCCTATAAAATTTAATGCCCTCTTGACGACATATGAAGTGGTTCTGAAGGATAAAGCTGTTCTCTCCAAGATTAAATGGAATTATTTGATGGTTGATGAGGCTCATAGACTGAAAAATAGTGAGGCTCAGCTGTACACTACACTTTCAGAATTTAGCACCAAGAACAAATTGCTCATCACTGGCACTCCACTGCAAAACAGTGTTGAAGAGCTATGGGCTTTGCTTCATTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTCCAAAACTATAAGAATCTGAGTTCGTTCAATGAGAATGAGCTTGCCAATCTTCATATGGAATTGAGGCCTCACATACTCCGAAGAGTCATCAAGGATGTGGAGAAATCATTGCCTCCAAAAATTGAGCGTTTACTTAGAGTTGAAATGTCTCCTCTTCAAAAACAGTATTACAAGTGGATTTTGGAACGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTACTTAATATTGTGGTTGAATTAAAGAAGTGCTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGGGGGGACTCAGGAAGTAGTGATAGCAGTAAACTCGAAAGAATTGTCTTCAGCAGCGGGAAGCTTGTAATACTTGATAAGCTACTTGTTAGATTGCATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGCTGGATATACTGGCTGAGTATATGTCACTTAGAGGATTTCAATTCCAGAGGCTTGATGGCAGTACAAAGGCTGAGTTACGACAGCAGGCAATGGATCATTTTAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACTAGAGCAGGAGGTCTGGGTATCAATCTTGCAACAGCAGACACTGTCATAATATTTGATTCAGACTGGAATCCCCAAAATGACCTCCAGGCCATGAGTAGAGCGCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTTTGACAAGCAAAAGCGTTGAGGAAGATATTTTGGAACGGGCTAAGAAAAAGATGGTCCTCGACCATTTGGTCATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAGGACTTTTTGACAAAAATGAGCTGTCAGCAATTTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGTAAGAAACGACTTTTAAGTTTGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCAGACGGAGAGCAAGCGCATGAACTTTTGAGTGCCTTTAAGGTTGCTAATTTCTGCAATGATGAAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAACCTGAGGCTATAGCCCAAGCTGAAGAAGCTTTGGTTCCACGTGCTGCAAGGAACATTAAAAGCTATGCAGAGGCCAATCAATCTGAAAGAGGTAGTAAACGAAAAAAGAAAGAACCTGAGCCTTCTGAGCGAGTTCAGAAGCGCCGGAAAGCAGAGTATTCAGTTCCTGCAACGGCAATGATTGAGGGAGCATCAGCCCAAGTGAGGAGTTGGTCCTATGGGAATGTATCTAAAAGAGATGCACTACGATTTTCTCGTGCAGTTATGAAATTTGGGAATGAGAGCCAAATCCACTTAATAGCTGCTGAGGTTAGTGGGGCATTTGCAGCTGCTCCGCCTGAAGCTCAGAATGAACTCTTCAATTCTCTAATTGATGGCTGTAAGGAAGCAGCGGAACTAGGAGGCATGGACCCAAAGGGACCTCTTTTGGATTTTTTTGGTGTCTCAGTGAAGGCAAATGATCTGCTTAACCGTGTTCAAGAACTCCAACTCTTGGCAAAGCGCATTAGTAGATATGAAGATCCTATAGCACAGTTTCGTGTTTTAACATATCTTAAACCTTCAAACTGGTCTAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATTCATTACCATGGATTTGGTAATTGGGAAAAGATACGATTAGATGAAAGGCTTGGCCTCATGAAGAAGATTGCACCAGTTGAACTTCATCACCATGAAACTTTCTTGCCACGAGCTCCCAATTTGAGAGATCGTGCTAATGCCCTTTTGGAACAAGAACTTCTTGTTCTTGGTGGAAAAAATGCCAATAGTAAAGGGGGACGCAAGGTTTCCAAGAAGGAGAGGGAAAATCTTATGAACATTCCGGTGGCACGTGGGCCAGAGAAGAGAAAATTAAGTTCTAAAGTTAATGTCCAAACGAGAAAGGATAGATCCCTGAAGCCCCAGAGGATTGAACCAATAGTAAAAGAAGAGGGTGAAATGTCTGACAATGATGAAGTGTATGAGCAGTTCAAGGAAGTAAAATGGATGGAATGGTGTCAGGATGTGATGATTGATGAAATGAAAACCTTGAAACGTCTGCACAGGCTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCCAAAATCCGCAATTACTTACAGCTTCTTGGGCTGAGGATAGATCAAATTGTGTTAGAACATGAAGAGGAACCTTACAAGCAAGATAGGATGACCACGCGATTGTGGAACTATGTCTCTACGTTCTCCCATCTTTCAGGGGAGAGGCTGCATCAAATCTATTCCAAACTCAAACAAGAGCAACAAGATGAGGCTGGGCTTGGCCCCTCTCACATCAATGGGTCAGTATCTGGTCCATTTGGTAGGAACTCTCACCATATGGATAGACAAAGAGGATATAAAAATGTGAGTTCCTATCAAATGCCAGAACCAGTTCACAATAAAGGAAAATCTGAGGCTTGGAAACGAAGGAGGAAAGGAGAAGGCGATAGTCATTTTCAGGGTCAGCCACCATCTCAAAGAGCTATGGGTAATGGAGTCCAAATATCTGACCCTAACTCACTGGGGATTCTTGGGGCTGGACCCTCTGATAGACGTTTTGTTAGCGAGAAACCTTATAGGACACGACCTGGTGGAGCTCCTCCAAGACAGGGTTTCTCCTCAGGAATAAAATAG 5250 0.416 MAFFRNFSNETVSHSILEEKGQGQNADRIHKSIGNECGDASSSEKEFDMNMDAQYHSDGEPDGRLQNDATADGVGNIQSTGSKTAMVGRWGSTFWKDCQPMSHQNRQEYGQESPSGSDYRNAEGAEDNSSDGRGERLDSEDDDGQKEAGKGPRGNSDVPAEEMLSDEYYEQEEHSDSLHYRGIHQKTGSSSWPQQMSNAVNSRANRNSRISDVVEDDDGGDDNDNDDGDADYEEEDEADEDDPDDVDFEPATSGRSANKDRDCEGEESDEDDDSDENLDVSDDDDTNYARKPSGRRCGKVGRTVKPTRERKSFAVSGRQRKPKTSFEEDESTAEDSESESDDDFKSMRKRGANARKNNDCSSAAASFSGRNSEVRTSSRTVRKKVSYVESEESEEADEGKKKKSQKEELEEEDGDSIEKVLWHQPKGTADEAQRNNRSTEPVLWSNLFDSVPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVTEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDSSGNVNIEYLVKWQGLSYAEVTWEKDTDIAFAQHAIDEYKARDAAMSVQGKMVDLQRKKSKASLRKLDEQPQWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNGQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRSGREVCQQYEFYNDKKAGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERLLRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFLTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGGLFDKNELSAILRFGAEELFKEERNDEESKKRLLSLDIDEILERAEKVEEKEADGEQAHELLSAFKVANFCNDEDDGSFWSRWIKPEAIAQAEEALVPRAARNIKSYAEANQSERGSKRKKKEPEPSERVQKRRKAEYSVPATAMIEGASAQVRSWSYGNVSKRDALRFSRAVMKFGNESQIHLIAAEVSGAFAAAPPEAQNELFNSLIDGCKEAAELGGMDPKGPLLDFFGVSVKANDLLNRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELLVLGGKNANSKGGRKVSKKERENLMNIPVARGPEKRKLSSKVNVQTRKDRSLKPQRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGLRIDQIVLEHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQQDEAGLGPSHINGSVSGPFGRNSHHMDRQRGYKNVSSYQMPEPVHNKGKSEAWKRRRKGEGDSHFQGQPPSQRAMGNGVQISDPNSLGILGAGPSDRRFVSEKPYRTRPGGAPPRQGFSSGIK 1749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1865 1749 MobiDBLite consensus disorder prediction 1215 1239 - -
Lele26g1865 1749 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 184 1679 - -
Lele26g1865 1749 SMART ultradead3 616 815 IPR014001 -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 376 420 - -
Lele26g1865 1749 Pfam SNF2-related domain 639 908 IPR000330 GO:0005524|GO:0140658
Lele26g1865 1749 SUPERFAMILY Chromo domain-like 507 583 IPR016197 -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 356 375 - -
Lele26g1865 1749 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 851 1081 - -
Lele26g1865 1749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 841 IPR027417 -
Lele26g1865 1749 ProSiteProfiles Chromo and chromo shadow domain profile. 415 494 IPR000953 -
Lele26g1865 1749 CDD CD2_tandem 526 582 - -
Lele26g1865 1749 Coils Coil 1134 1161 - -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 215 247 - -
Lele26g1865 1749 CDD CD1_tandem 413 493 - -
Lele26g1865 1749 SMART helicmild6 966 1050 IPR001650 -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 103 118 - -
Lele26g1865 1749 SUPERFAMILY Chromo domain-like 412 495 IPR016197 -
Lele26g1865 1749 Gene3D - 530 582 - -
Lele26g1865 1749 Coils Coil 392 412 - -
Lele26g1865 1749 Gene3D - 851 1081 IPR027417 -
Lele26g1865 1749 FunFam Photoperiod-independent early flowering 1 590 864 - -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 124 150 - -
Lele26g1865 1749 Pfam Chromo (CHRromatin Organisation MOdifier) domain 529 583 IPR023780 -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 341 355 - -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 302 329 - -
Lele26g1865 1749 SMART chromo_7 413 496 IPR000953 -
Lele26g1865 1749 SMART chromo_7 526 585 IPR000953 -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 182 208 - -
Lele26g1865 1749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1125 IPR027417 -
Lele26g1865 1749 Gene3D - 1347 1451 - -
Lele26g1865 1749 Gene3D - 401 527 - -
Lele26g1865 1749 Coils Coil 1080 1100 - -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 32 83 - -
Lele26g1865 1749 CDD SF2_C_SNF 927 1061 - -
Lele26g1865 1749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 940 1091 IPR001650 -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 41 65 - -
Lele26g1865 1749 Gene3D - 611 850 IPR038718 -
Lele26g1865 1749 ProSiteProfiles Chromo and chromo shadow domain profile. 528 592 IPR000953 -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 1691 1710 - -
Lele26g1865 1749 SMART DUF4208_2 1517 1622 IPR025260 -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 1211 1239 - -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 103 420 - -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 264 282 - -
Lele26g1865 1749 FunFam protein CHROMATIN REMODELING 5 isoform X2 530 582 - -
Lele26g1865 1749 FunFam Chromo domain-containing protein 1 403 528 - -
Lele26g1865 1749 Pfam Domain of unknown function (DUF4208) 1529 1621 IPR025260 -
Lele26g1865 1749 Pfam Helicase conserved C-terminal domain 937 1050 IPR001650 -
Lele26g1865 1749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 632 804 IPR014001 -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 1673 1689 - -
Lele26g1865 1749 MobiDBLite consensus disorder prediction 1625 1749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1865 Lele-ChrLele26 22287990 22309875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1865 642 1077 RAD5 or RAD16-like Gene Family AT1G02670 25.941 1.28e-34 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele26g1865 SNF2_N 2.8e-64 CL0023