Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1858 ATGTCGCGGACTGATAGAATGATGTCGGATCTTAACAAAACTGGTCCTGTGGAAAGAGACACTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTTGCTTGCTCAAATATGGAAGAAGGGGGAAACCCAAGTTTTGTCCCTTCCGCCTTTCAAATGATGAATCTGTTTTAATATGGTTCTCAGGGAAGGAGGAGAAACACCTTAAACTTAGCCATGTCTCCAGAATCATCTCTGGACAGCGCACACCAATCTTTCAAAGATATCCACGGCCAGAAAAGGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCATTGGACTTGATTTGCAAAGACAAAGATGAGGCTGAAGTTTGGTTCAGTGGTTTGAAAGCATTAATAGCACGTAGCCATCAACGGAAGTGGAGAACAGAATCAAGAAGTGATGGTATTCCTTCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTAAGTTCTCCATTTGGTAGTAATGAAAGCTTACAGAAGGATAGTGGAGATCAACTTCGCCTTCATAGTCCTTATGAGAGTCCCCCAAAGAATGGTTTGGATAAAGCATTATCTGATGTGATTTTGTATGCTGTTCCTCCGAAGGGATGCTTCCCTCCAGATTCTGCCAGTGGTTCAGTCCACTCCGTGTCATCAGGAGGATCTGACAGTGTACATGGCCATATGAGGACAATGCCTATGGATGCTTTTAGAGTTAGTCTTTCAAGTGCTGTCAGTTCATCCAGCCAAGGTTCTGGCCATGATGACGGTGATGCATTAGGAGATGTCTTCATTTGGGGAGAAGTCACAGGTGATGGTGTTTTGGGTGGTGGGACTCAGCGAGTTGGCAGTTGTGTTGGTGTAAAAATGGATTCTCTATTGCCCAAGGCCTTGGAATCTGCAGTAGTACTTGATGTTCAGAATATTGCTTGTGGTGGACGGCATGCAGCCTTGGTGACTAAGCAAGGAGAAATTTTTTCATGGGGCGAAGAATCAAGAGGTAGGCTTGGTCATGGTGTTGATTCTGACGTTCTTCATCCAAAGCTTGTGGAAGCTCTAAGTAATACAAATATTGAACTTGTTGCTTGTGGGGAGTATCATACATGCGCTGTGACACTTTCTGGTGATCTTTACACATGGGGTGATGGTACCTACAATTATGGTCTCCTTGGGCATGGAAATCAAGTGAGTCACTGGGTCCCCAAAAGAGTAAATGGGCCCTTGGAGGGCATGCATGTTTCATCTATCTCATGTGGACCATGGCACACTGCGGTAGTAACCTCTTCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTAGGTCATGGGGACCGAAAAAGTGTTTCAATACCAAGGGAAGTAGAGTCCCTTAAGGGACTTCGTACCGTGCGTGCTGCTTGTGGTGTTTGGCATACCGCTGCTGTAGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAATTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGTGACAAGGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGCTCTTGTTGAGCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTCTGACTATTGCACTTACAACACAGGGCCACGTTTATACAATGGGTAGTCCTGTCTATGGTCAGTTGGGGAATCCCCAAGTTGATGGGAAGCTACCAACACGTGTTGAAGGAAAGCTCTCAAAGGGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGTAGTTTTAACTTCAAGGACCGAGGTTTACACTTGGGGCAAGGGTGCGAATGGACGTTTAGGCCATGGGGATACAGATGATAGAAGTACCCCGACATTAGTAGAAGCTCTTAAAGATAAGCAAGTCAAAAGTATTGCTTGTGGTACTAATTTTACTGCAGCTATCTGTCTTCATAAGTGGGTCTCTGGTGTTGACCAGTCCATGTGTTCTGGTTGCCGTCTGCCATTTAATTTTAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTCTTAAAGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTCAATAAACTAAGAAAAGCTATTGAAACTGATTCTTCATCACATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATCAGGGATCATTTGAGTTTATTGATAAGGATGATAAGTTGGATTCAAGATCTCGTAATCAGCTTGCAAGATTCTCTTCAATGGAATCCTTGAAGCAAGTGGAAAGCAGGTCTTCGAAGAAAAACAAGAAATTGGAATTCAACAGTAGTCGTGTGTCACCTGCTCCAAATGGAGGCTCCCAGTGGGGAGCACTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCGAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCTCGAGCAACATCCCCCATTTCCAGACGGCCCAGTCCACCTCGTTCAACTACTCCAACCCCAACACTGGGGGGACTTACCTCCCCAAAGATTGTGGTGGATGATTCTAAGAGGACAAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGAGCGCAGGTGGAAAATCTGACTCGCCAAGCTCAACGTCAAGAAATTGAGCTAGAAAGAACAACTAAACAGCTGAAAGAAGCAATAGCCATTGCTGGTGAAGAAAGTGCTAAATGTAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCTCAGTTGAAGGAAATGGCTGAAAGGCTACCTGTTGGAGCAGCAAGGAACATCAAATCACCTTCTCTTGCTTCTTTTAGTTCCAGTCCTAGTTCCAATGAACTCAGCATTGCTTCTGTCGAGCGATTGAATGTTCAGGCTACTAATGTAGAACCAGACTTGACGGGATCAAACAATCAGTTACTGTCAAATGGATCAAGCACCATCAATAACCGTATTTCAGGTCACAATAAACTGAGCCAGTCAGATGCATCAAGTAGAAATGGAAGCAGAACAAAGGAAAGTGAATCTCGTAGTGAGAATGAACGGGTTGAGCAGGATGAACCTGGTGTATATATCACACTTACTTCCCTACCAGGAGGTGTAATAGATCTGAAGAGAGTTCGCTTCAGGAGTGCTTGCTATCTCATTGTCCCACCTCCCGCTTTTTTAGTTGCGTTTGATACAATATCTCTTGCATATTCTAACCTTTACACTGGTGAACACAGTCGGAAGCGGTTTAGTGAAAAACAGGCAGAACAATGGTGGGCTGAGAACCGTGCACGCGTGTATGAACAATACGATGTGCGCATGGTTGACAAATCCGCTGTTGGTGTGGGGAGTGAGGACCTGGCTCATTGA 3423 0.4379 MSRTDRMMSDLNKTGPVERDTEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALIARSHQRKWRTESRSDGIPSEANSPRTYTRRSSPLSSPFGSNESLQKDSGDQLRLHSPYESPPKNGLDKALSDVILYAVPPKGCFPPDSASGSVHSVSSGGSDSVHGHMRTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEVTGDGVLGGGTQRVGSCVGVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESRGRLGHGVDSDVLHPKLVEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGMHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTIALTTQGHVYTMGSPVYGQLGNPQVDGKLPTRVEGKLSKGFVEEIACGAYHVVVLTSRTEVYTWGKGANGRLGHGDTDDRSTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKAIETDSSSHSSVSRRGSVNQGSFEFIDKDDKLDSRSRNQLARFSSMESLKQVESRSSKKNKKLEFNSSRVSPAPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDSKRTNDSLSQEVIKLRAQVENLTRQAQRQEIELERTTKQLKEAIAIAGEESAKCKAAKEVIKSLTAQLKEMAERLPVGAARNIKSPSLASFSSSPSSNELSIASVERLNVQATNVEPDLTGSNNQLLSNGSSTINNRISGHNKLSQSDASSRNGSRTKESESRSENERVEQDEPGVYITLTSLPGGVIDLKRVRFRSACYLIVPPPAFLVAFDTISLAYSNLYTGEHSRKRFSEKQAEQWWAENRARVYEQYDVRMVDKSAVGVGSEDLAH 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1858 1140 Coils Coil 923 943 - -
Lele26g1858 1140 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Lele26g1858 1140 Pfam Transcription factor regulating root and shoot growth via Pin3 1096 1121 IPR013591 -
Lele26g1858 1140 Pfam Transcription factor regulating root and shoot growth via Pin3 1034 1065 IPR013591 -
Lele26g1858 1140 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Lele26g1858 1140 ProSiteProfiles BRX domain profile. 1035 1122 IPR013591 -
Lele26g1858 1140 Gene3D - 393 492 IPR009091 -
Lele26g1858 1140 Gene3D - 217 392 IPR009091 -
Lele26g1858 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 329 IPR000408 -
Lele26g1858 1140 Pfam Transcription factor BRX N-terminal domain 918 952 IPR027988 -
Lele26g1858 1140 SUPERFAMILY RCC1/BLIP-II 268 658 IPR009091 -
Lele26g1858 1140 Gene3D - 19 137 IPR011993 -
Lele26g1858 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 436 IPR000408 -
Lele26g1858 1140 FunFam Putative E3 ubiquitin-protein ligase HERC1 663 731 - -
Lele26g1858 1140 MobiDBLite consensus disorder prediction 835 866 - -
Lele26g1858 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Lele26g1858 1140 MobiDBLite consensus disorder prediction 143 175 - -
Lele26g1858 1140 MobiDBLite consensus disorder prediction 983 1022 - -
Lele26g1858 1140 SUPERFAMILY PH domain-like 20 128 - -
Lele26g1858 1140 MobiDBLite consensus disorder prediction 983 1042 - -
Lele26g1858 1140 SUPERFAMILY FYVE/PHD zinc finger 657 728 IPR011011 -
Lele26g1858 1140 CDD PH_PLC_plant-like 19 129 - -
Lele26g1858 1140 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Lele26g1858 1140 FunFam PH, RCC1 and FYVE domains-containing protein 1 491 662 - -
Lele26g1858 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 604 IPR000408 -
Lele26g1858 1140 CDD FYVE_like_SF 666 719 - -
Lele26g1858 1140 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 316 326 IPR000408 -
Lele26g1858 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Lele26g1858 1140 Pfam FYVE zinc finger 657 723 IPR000306 GO:0046872
Lele26g1858 1140 MobiDBLite consensus disorder prediction 767 804 - -
Lele26g1858 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 381 IPR000408 -
Lele26g1858 1140 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Lele26g1858 1140 PRINTS Chromosome condensation regulator RCC1 signature 439 453 IPR000408 -
Lele26g1858 1140 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Lele26g1858 1140 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Lele26g1858 1140 PRINTS Chromosome condensation regulator RCC1 signature 313 326 IPR000408 -
Lele26g1858 1140 PRINTS Chromosome condensation regulator RCC1 signature 382 398 IPR000408 -
Lele26g1858 1140 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Lele26g1858 1140 SMART fyve_4 655 724 IPR000306 GO:0046872
Lele26g1858 1140 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Lele26g1858 1140 MobiDBLite consensus disorder prediction 790 804 - -
Lele26g1858 1140 Pfam Unstructured region between BRX_N and BRX domain 959 1028 - -
Lele26g1858 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Lele26g1858 1140 Coils Coil 867 915 - -
Lele26g1858 1140 MobiDBLite consensus disorder prediction 1023 1041 - -
Lele26g1858 1140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 729 IPR013083 -
Lele26g1858 1140 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 942 - -
Lele26g1858 1140 FunFam PH, RCC1 and FYVE domains-containing protein 1 239 490 - -
Lele26g1858 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 381 433 IPR000408 -
Lele26g1858 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 330 378 IPR000408 -
Lele26g1858 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 436 485 IPR000408 -
Lele26g1858 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 606 653 IPR000408 -
Lele26g1858 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 553 601 IPR000408 -
Lele26g1858 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 500 549 IPR000408 -
Lele26g1858 1140 Gene3D - 497 668 IPR009091 -
Lele26g1858 1140 MobiDBLite consensus disorder prediction 137 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1858 Lele-ChrLele26 22231816 22240127 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1858 26 22231816 22240127 Lele27g0255 27 2050302 2059222 hybridization
Lele26g1858 26 22231816 22240127 Lele28g1865 28 22068824 22077184 hybridization