Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1846 ATGGGCAACTGTTGCTCCGGCAAGGGCAAAGATGCCCCGACCACCGACAACGACAAGGAAGGAGAAGCAAGTGCCGGCGACAACAACAACCAACAGAACAATAACAACAACAATGCGGGAGGAGGAGGAGGAACCACCTCTTCCAACCCTTCCCCCGCCAAGCCTTCTCCCGCGAGGTCCCCTCCTCCGGCGAAAAAAGGCCCAATCGGTACAGTCCTCGGCCGGCCCATGGAAGACATAAAGGCCACGTACAGCATCGGAAAGGAGCTAGGACGAGGACAATTCGGGGTGACCCACTTATGCACACATAAAACAACTGGTCAGCAATTTGCATGCAAAACCATAGCCAAGAGGAAGCTTGTGAATAAGGATGATATAGAAGATGTACGTAGGGAGGTTCAAATCATGCACCATTTGGCTGGTCAGCCTAATATTGTGGAGCTCAAAGGTGCGTACGAGGACAAGCAATCGGTTCATCTCGTCATGGAGCTATGTGCCGGCGGTGAACTCTTCGACCGGATCATCGCCAAAGGTCATTACACCGAGCGAGCCGCTGCGTCGTTGTTGAGAACCATAGTTCAGATCGTCCATACTTGCCATTCCATGGGTGTCATACATAGAGATCTCAAGCCTGAGAATTTCCTTTTGCTTAATAGGGATGAGAATTCTCCTCTCAAAGCCACCGATTTCGGTCTATCCGTTTTTTACAAGCAAGGAGAGATATTTAAAGACATTGTTGGGAGTGCATATTACATAGCCCCAGAAGTATTGAGGAGGAAATATGGGCCAGAAGCTGATATTTGGAGTGTTGGCGTTATGCTTTACATTCTTCTTTGTGGAGTTCCTCCATTTTGGGCAGAATCTGAGAATGGAATATTCAATTCAATCTTAAGAGGGCAGGTTGACTTTTCAACGGATCCATGGCCTAGCATATCTCCTTCAGCAAAAGATCTCATCAGCAAAATGTTGAATTCAGATCCCAAGCAAAGGATCTCAGCCTATCAAGTCTTAAATCACCCATGGATAAAGGAGGATGGAGAAGCACCAGATAAACCTCTTGATAATGCTGTTCTGAATAGGCTCAAGCAATTCAGAGCAATGAATCAATTCAAGAAAGTTGCTCTAAAGGTAATTGCTGGGTGCTTATCAGAGGAAGAAATAATGGGGTTGAAGCAGATGTTCAAGGGAATGGACACAGACAATAGTGGGTGCATAACAATTGAAGAGCTCAAGCATGGGCTTGCAAAGCAAGGCACAAAACTCAGTGAACAAGAAGTCAAACAATTATTAGAAGCTGCTGATGCTGATGGGAATGGAACGATAGATTATGACGAGTTCATCACAGCAACATTGCATTTGAACCGAATCAACAAAGAAGAACATCTTTACACTGCTTTCCAATACTTTGATAAAGACAACAGCGGGTTCATTACGGTTGAGGAACTAGAGCAGGCACTCCGAGAATATAACATGCATGATGGTAGGGACATCAACGAAATATTATCAGAAGTTGACGCCGACAATGATGGTCGGATCAACTACGAGGAGTTCGCAGCAATGATGAGGAAAGGAGCTCCAGAAGCCCAAACCAGGAAGAGACGAACAAATTCATTTGTTTAA 1620 0.4562 MGNCCSGKGKDAPTTDNDKEGEASAGDNNNQQNNNNNNAGGGGGTTSSNPSPAKPSPARSPPPAKKGPIGTVLGRPMEDIKATYSIGKELGRGQFGVTHLCTHKTTGQQFACKTIAKRKLVNKDDIEDVRREVQIMHHLAGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNRDENSPLKATDFGLSVFYKQGEIFKDIVGSAYYIAPEVLRRKYGPEADIWSVGVMLYILLCGVPPFWAESENGIFNSILRGQVDFSTDPWPSISPSAKDLISKMLNSDPKQRISAYQVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALKVIAGCLSEEEIMGLKQMFKGMDTDNSGCITIEELKHGLAKQGTKLSEQEVKQLLEAADADGNGTIDYDEFITATLHLNRINKEEHLYTAFQYFDKDNSGFITVEELEQALREYNMHDGRDINEILSEVDADNDGRINYEEFAAMMRKGAPEAQTRKRRTNSFV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1846 539 ProSiteProfiles EF-hand calcium-binding domain profile. 496 527 IPR002048 GO:0005509
Lele26g1846 539 Gene3D Phosphorylase Kinase; domain 1 86 169 - -
Lele26g1846 539 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Lele26g1846 539 Pfam Protein kinase domain 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele26g1846 539 Gene3D - 350 525 - -
Lele26g1846 539 MobiDBLite consensus disorder prediction 24 53 - -
Lele26g1846 539 CDD STKc_CAMK 84 341 - -
Lele26g1846 539 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Lele26g1846 539 Pfam EF-hand domain pair 459 522 IPR002048 GO:0005509
Lele26g1846 539 Pfam EF-hand domain pair 390 450 IPR002048 GO:0005509
Lele26g1846 539 ProSitePatterns Protein kinases ATP-binding region signature. 90 117 IPR017441 GO:0005524
Lele26g1846 539 SMART serkin_6 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele26g1846 539 FunFam Calcium-dependent protein kinase SK5 252 347 - -
Lele26g1846 539 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
Lele26g1846 539 MobiDBLite consensus disorder prediction 1 76 - -
Lele26g1846 539 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Lele26g1846 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Lele26g1846 539 SUPERFAMILY EF-hand 382 522 IPR011992 -
Lele26g1846 539 Gene3D Transferase(Phosphotransferase) domain 1 170 349 - -
Lele26g1846 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 78 517 - -
Lele26g1846 539 FunFam Calcium-dependent protein kinase 1 350 525 - -
Lele26g1846 539 ProSiteProfiles EF-hand calcium-binding domain profile. 385 420 IPR002048 GO:0005509
Lele26g1846 539 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Lele26g1846 539 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Lele26g1846 539 ProSiteProfiles Protein kinase domain profile. 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele26g1846 539 SUPERFAMILY Protein kinase-like (PK-like) 83 347 IPR011009 -
Lele26g1846 539 FunFam CDPK-related kinase 3 76 244 - -
Lele26g1846 539 FunFam Calcium-dependent protein kinase 1 86 169 - -
Lele26g1846 539 SMART efh_1 389 417 IPR002048 GO:0005509
Lele26g1846 539 SMART efh_1 425 453 IPR002048 GO:0005509
Lele26g1846 539 SMART efh_1 496 524 IPR002048 GO:0005509
Lele26g1846 539 SMART efh_1 461 489 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1846 Lele-ChrLele26 22098568 22112265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1846 1 538 EF-hand Containing Proteins AT5G12180 78.996 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele26g1846 Pkinase 4.3e-76 CL0016