Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1820 ATGCCTACCATTAAGATCACACCAGCGCATCTTCACACTGATTCACACTGTCCAGTTTGTCAAGAAAAATTCGAGCTAGGCTCCGAGGCTAGGAAAATGCCCTGTAACCATATTTATCATTCTGACTGTATTGTTCCTTGGTTGGTTCATCATAACTCCTGTCCTGTTTGCCGCGTTGAGCTTCCACCACCAGGACAGAGCAGTTCCCGTGATGGAACTCACGGAGGAAGGAATGCCAGAAGTAGCAGTAACTGTCGTGATGGCTCAAGGAGGCAGAACCAAGGAGGGAGAAATCCACTATCATCTTGGTGGCCATCCTGA 321 0.4829 MPTIKITPAHLHTDSHCPVCQEKFELGSEARKMPCNHIYHSDCIVPWLVHHNSCPVCRVELPPPGQSSSRDGTHGGRNARSSSNCRDGSRRQNQGGRNPLSSWWPS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1820 106 SMART ring_2 17 57 IPR001841 -
Lele26g1820 106 MobiDBLite consensus disorder prediction 61 106 - -
Lele26g1820 106 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 62 - -
Lele26g1820 106 MobiDBLite consensus disorder prediction 66 106 - -
Lele26g1820 106 SUPERFAMILY RING/U-box 2 64 - -
Lele26g1820 106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 74 IPR013083 -
Lele26g1820 106 Pfam Ring finger domain 16 58 IPR001841 -
Lele26g1820 106 ProSiteProfiles Zinc finger RING-type profile. 17 58 IPR001841 -
Lele26g1820 106 FunFam E3 ubiquitin-protein ligase RING1-like 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1820 Lele-ChrLele26 21815084 21815404 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1820 1 62 C3H Transcription Factor Family AT2G44330 54.412 4.86e-21 80.9