Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele26g1817 | ATGTCAAGTGGACCAACGCACTGGTGTTATGAGTGTGGACATCCGATTGTGCTTGAAGGGAGAGAAGTCACTTGCCCTTATTGTCATGAAGGTTTTGTGCAAGAACTTAATGAGAGGCATGAGTTCCAACCATATAATGCTCTTGAAGAGTTTCATCCCATGCCTGACTTTTTTGATGCCATACATGCCTTTATGGCACAGAGAGCTCCCGAACCAAGATTTGGGCTTATAAATGCTTTTGACAATTTCATGAGGCAAAGAATAGCTGGCCAATACCCCAACTTTGATCTTAGACAAAGGTCTGATAACGCACGATTTCCTGAATGGAGTCAGGATTTTTTCAATTCTGGCCCTTCTTTCGTGTTTCATGGTACTGGAGATGAACCAAGGTCTATTGATTTCGGCGGTTTATTGATGGCCCCAGGACTGGAAGCATTTATTCAACAGCTCACCATGAATGATCATAGAGGTCCTCCTCCAGCCTCACATTCTTCAATTGATGCAATGCCTACCATTAAGATCACACCAGTGCATCTTCGCTCTGATTCACACTGTCCAGTTTGTCAAGAAAAATTCGAGCTAGGCTCTGAGGCTAGGAAAATGCCCTGTAACCATATTTATCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCCTGTCCTGTTTGCCGCGTTGAGCTTCCACCACCTGGACAGAGCAGTTCCCGTGATGGAACTCATGGAGGAAGGAATGAGAGTAGCAGCAGTAACCGTCGTGATAGCTCAAGGAGGCAGAACCAAGGAGGGAGAAATCCACTATCAGCTTGGTGGCCATTCTGA | 825 | 0.4521 | MSSGPTHWCYECGHPIVLEGREVTCPYCHEGFVQELNERHEFQPYNALEEFHPMPDFFDAIHAFMAQRAPEPRFGLINAFDNFMRQRIAGQYPNFDLRQRSDNARFPEWSQDFFNSGPSFVFHGTGDEPRSIDFGGLLMAPGLEAFIQQLTMNDHRGPPPASHSSIDAMPTIKITPVHLRSDSHCPVCQEKFELGSEARKMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPPGQSSSRDGTHGGRNESSSSNRRDSSRRQNQGGRNPLSAWWPF | 274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele26g1817 | 274 | CDD | RING-H2_RNF126_like | 185 | 226 | - | - | |
| Lele26g1817 | 274 | SUPERFAMILY | RING/U-box | 165 | 232 | - | - | |
| Lele26g1817 | 274 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 96 | 230 | - | - | |
| Lele26g1817 | 274 | Pfam | Ring finger domain | 184 | 226 | IPR001841 | - | |
| Lele26g1817 | 274 | SMART | ring_2 | 185 | 225 | IPR001841 | - | |
| Lele26g1817 | 274 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 233 | IPR013083 | - | |
| Lele26g1817 | 274 | MobiDBLite | consensus disorder prediction | 231 | 274 | - | - | |
| Lele26g1817 | 274 | FunFam | E3 ubiquitin-protein ligase RING1-like | 148 | 232 | - | - | |
| Lele26g1817 | 274 | ProSiteProfiles | Zinc finger RING-type profile. | 185 | 226 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele26g1817 | Lele-ChrLele26 | 21757482 | 21758306 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele26g1817 | 110 | 253 | C3H Transcription Factor Family | AT1G68180 | 34.028 | 8.38e-24 | 94.7 |