Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1784 ATGGAAAAAGCAAATACAGATGCAGTTTCTGGAGTTCGAAGTGATGGAGATTCCTTGTCAGATCCTGCTCATTATTATCGTCTACAGACATTCACAGGAAATGAAAAAGCTGATAATTCCTCCTTGCTTCAGCAGTCCAGACGACCAAGCCTCACCTCTTTGCATATGCCAGTAAGGTCAATAGATAGTGCGTTATCATCTTCTGCAAAGACAGATGTTCTATCACTGTCAAGTCCAGGTTCTGCTCGAGGAGGACTGCCTCCAAGACCAAATTCAGCTAGAGTCAGGTCTTCCATGAGAAGTTTACTTCCTCAGAGGAGTTTAAAGGCAAAAAACTACTCTCCAGAATGTGAAAGGGAAGTTCTCATTGTTTCTGATATTCCCTCATCAGATGGAACTTTGGATAAGCCTTCAACTTCAAGGTCCCTTTCTTTTAATAAGTTTTTGTTCCCTTCATCAACAAAAACATCAAATTCATCACCAGCTATACCAATTGCAATTACAGTTGCAGAGACCACCACGCTTGGAAGTCATCTAGGAAGTGATCCTGACTTGAGTCGAACAGGTTCTAGTGGTTTGATCCGAGTAATTTCAGCAAGATCACATCCTGCAGCTGTTAATGACCATTCAATTGATAAAGCTTCAGTACCAGAGATTGATGCTACTGAGGACATTCCTGAAGAAGAAGCAGTTTGTAGGATTTGTTTAATGGAGCTGGGGGGAGGGGGAGATACCCTTAAGATGGAGTGCAGTTGTAGAGGTGACCTTGCGCTTGCTCACCAAGAGTGTGCAGTGAAGTGGTTTAGTATAAAAGGAAACAAGACATGTGATGTTTGCAAGCAGGAGGTCCGAAATCTTCCAGTTACTCTCTTGAAAATCCAAAGTCCTCATCCTACTGATGGACGGCCATCAAATACCCCACAGGAGACAGAACTTTCTTTTCACAGGCAAGTTCAACAGTTTCAATGTGCTAGCTCTTCTTGTGATCTGGCAGGATGTTCCCGTACTTGTCTTGGTCAGCATGCTAGCTTACTTTTGCTTTTTAGAGCAACTTCTGGAGTCATAACCTCATCTGCTAAGAGAAGATTCTGA 1092 0.4277 MEKANTDAVSGVRSDGDSLSDPAHYYRLQTFTGNEKADNSSLLQQSRRPSLTSLHMPVRSIDSALSSSAKTDVLSLSSPGSARGGLPPRPNSARVRSSMRSLLPQRSLKAKNYSPECEREVLIVSDIPSSDGTLDKPSTSRSLSFNKFLFPSSTKTSNSSPAIPIAITVAETTTLGSHLGSDPDLSRTGSSGLIRVISARSHPAAVNDHSIDKASVPEIDATEDIPEEEAVCRICLMELGGGGDTLKMECSCRGDLALAHQECAVKWFSIKGNKTCDVCKQEVRNLPVTLLKIQSPHPTDGRPSNTPQETELSFHRQVQQFQCASSSCDLAGCSRTCLGQHASLLLLFRATSGVITSSAKRRF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1784 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 287 IPR013083 -
Lele26g1784 363 CDD RING_CH-C4HC3_MARCH 232 280 - -
Lele26g1784 363 SUPERFAMILY RING/U-box 228 283 - -
Lele26g1784 363 MobiDBLite consensus disorder prediction 35 55 - -
Lele26g1784 363 MobiDBLite consensus disorder prediction 72 100 - -
Lele26g1784 363 MobiDBLite consensus disorder prediction 1 22 - -
Lele26g1784 363 SMART ringv_2 231 280 IPR011016 GO:0008270
Lele26g1784 363 ProSiteProfiles Zinc finger RING-CH-type profile. 224 286 IPR011016 GO:0008270
Lele26g1784 363 PANTHER OS02G0165000 PROTEIN 36 319 - -
Lele26g1784 363 Pfam RING-variant domain 232 279 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1784 Lele-ChrLele26 21393828 21398092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1784 218 286 C3H Transcription Factor Family AT2G37950 46.479 3.26e-14 69.3