Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1740 ATGCCCCAATACGCTTGTAGCCTGCTTATTATTTGCTTTATTTCCTGCCCGCCCACGAACAAAACCCAAACGGAGGAGCCGAAGGACAAAACCCAGATTCAAGTGCCAGCTACTTTACTGGTTACTGAATCAATTAGTGACTTTATATCTTTGGTCGGTAGTTTTGGGAAAGCTTGTGATTTGTGGGGATTGGGGAAAGTTTGGTACTTTGGTTCAACCCTGTGTTCTGAAGCTGGTTTTACAAGCAATTTTTTCTGGTTGGCAGAAGATGAAACTGCTCGCTTATATGCTGAGTTTCTTGAGTCATTTCAAGGGGATACCACTCCTGGATCAAAGGCTTTTGTTCGAGGAGGAACAATTAATCCCAATGAAAAATTGAAAGCGGATTCTGAAGGTGAAAAGTCCAAAGATGGGGTTTCTGGTTCAAAGAAGGGAAGTAGGTATGTTCCCTCTTTTATACCTCCTCCTTTGGCAACCAAGGGAAGAGAATCTGAGAAGAAAGAGGAGAAGCCTAAGGAGGAGAAAGGTAAGTCACGGAACATAGATAATTTTATGGAGGAGTTAAAACATGAGCAAGAGATGAGGGAGAGGAGAAATCAAGAACGTGAACATTGGCGTGATGGGCGCAATACAGAACATTCTACTATTAGTCGCTTTGATGAACTGCCTGATGATTTTGATCCAAGTGGAAAACTGCCAGGATCATTAGATGATGGTGATCCACAAACTACGAACCTATACGTTGGAAATCTCTCTCCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGGCCCATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAACGAAGGCGGCAAAGAAACTGTGGCTTTGTTGCTTTCATGAATAGAGCTGATGGGCAGGCTGCTAAAGATGAAATGCAAGGGGTTGTGGTTTATGAGTATGAATTGAAAATTGGGTGGGGTAAGTCTGTTGCTCTCCCATCACAAGCGCTGCCTGCACCTCCGCCAGGGCATATGGCCATCAGGAGTAACGAGGGTGCCACTGTGATCTTGTCTGGTCCATCAGGTCCACCAGTAACTTCTGTGCCAAATCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCCGATATAATGGTTACATCTCCTGAAGATGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGACGGAGGATGTGCTTTTGAACAAGCCATTATGGAGAGGGGCCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGCTCCAAGGAGCATACTTACTATGTTTGGAGACTATACTCATTTGCTCAGGGTGACACTCTTCAAAGATGGCGGACAGAACCCTTCATTATGATAACTGGTAGTGGAAGATGGATTCCTCCATCATTGCCCTCTGGAAAAAGTCCAGAACATGAAAAGGTGTCTGGCTCCACACATGCTGCAGGAAGAAGCAGGCGCTTGGAACCTGAAAGAACACTGACTGATGCACAAAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAAAGGAGTCAAATAAAAGAAGCTATGGGGTTTGCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTATTGACAGAATCCTTGACACTTAAAGAGACCCCTATTGCAGCTAAAGTTGCAAGGCTCATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCTCCTGTAAGGAATGCATCTGCATATCGCACCAAGTTTGAAGCAGCATTGCCTGATATAATGGAGAGTTTTAATGACTTATATCGTAGCGTAACAGGACGTATGACTGCTGAGGCCCTAAAGGAACGAGTGCTAAAAGTTCTGCAAGTTTGGGCAGATTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTACGAGCCACATTTCTTCGTTCTGGCAACTCTGGTGTTACACTATTTCATTCCATCTGTGGTGATGCACCTGAAATTGAGAAAAATATACATTCTGAAGATACAGTTGATGGCAGCAAGAGCAACCAAGATTCTGCATTGGCAATGGGGCTAGGAGCTGCAACGAAGGAACTAATGTCTCTTCCTCTTGCTGAGCTTGAAAGACGATGTCGACACAATGGATTGTCACTTGTGGGTGGTAGGGAAATGATGGTTGCACGGTTGCTTAGCCTGGAGGAGGCAGAAAAGCAAAGGTGTTATGAACTAGATGATGAATTGAAATATGCTCAGAACCAAGCAAGTTCTGGGAGGTATTCAAGTAGTCGGAGAGAAACAAGCATTGAGACTGAGCCAGTGGGTTTCTCTGGATGGAACCAGTATGGGGAAGATGATTTACACTCACAAGACAAAGGCTCAGTATCTCTGGCACAAACTTTGCCCATTCCACACCCTGAATTGAAAGCCTTTACGAAAAAAGAAAAGAATGATCCTGTTTTACCAGCTTCTAAATGGGCTCGCGAGGATGATGATAGTGATGATGAACAAAAGGGTCGTGAAAAGGGTTTGGGATTAAGCTACTCCTCTTCTGGTAGTGAGAATGCAGTTGATGGTACTATTAAGGCAGATGAGCTGGAGTCTGTTGCTGATACAAGCATTTCCGCACCGGCTGATAGTGGAATGAATGAAGAGCAGAGGTTGTATATTGCTTCATCTCATTTTTCTGTCCAATTGTATAATTCCAGCAGTAGATATGTTGTCTTTGGAATTGTGCACGTGTTGCAGAAGTTGAGACGCCTAGAAGTTGCTTTAATTGAATACCGGGAGTCTCTTGAAGAGAGGGGAATAAAAAATTTGGAGGAAGTTGAGAGAAAAGTCACCCTGCACAGGAAACGGCTGCAAGCAGAGTTTGGATTATCAGATTCTGGAGAAGATGGTCAAGGAAGAAGGACATCTTCAGAGAGGAGGGACATGGCAAGAAAACGCCACCGTAGTCATAGTCGAAGTCATAGTCCACCACGAAGATCATCGGGCAGAGACAGGGAGAGGGAACATGATGCAGACAGGGACCGAGATAGACAGAGAGATAGAGGAGATTTGTTTCAGACTAGACAGACAGGTGACTTCTCCTTAGTAGATCCTTATCAGCAACTGCTTGTATTGGCAATTCAAGTTCCCCGAAGTGTTTTCAGTATCAAACGATTGACAATACCTGAAAACCCAAATGTCCCCGAATTGATTGATGGAACACAATATTTGTTTCGTTTGTGTGGCTGTATAGGTTCAAAGCTTGATCTGAAGAAGTTTGAGGTTTTGCTTACCTATGCCATAATGGGGCATGTAGACCTTGATGTGCCAGTCAAATCAAATAACAGCAGTAAAATTTGTTTCAACATCGACGTTGCACTTAATGGAAGGACTGGCTTATATGGGTTAGATACTCATTATTGCATCTTATCTCTCATCTCTATTTGCAGGGCTGTTATTGCTACTGCACCAGATGCTGGTCAACTGATTTCCATGCTTCTGCAGCTAGTCAATGCGAAAAAGACTATTGGAGTTGGAGTCTTCACTGGATACTCCCTTTTGCTCACGTCTCTTTCAATTCCAGAGGATGTGAAGGTTATCTGGATTTTCACTGGCATTGCTTAA 3600 0.435 MPQYACSLLIICFISCPPTNKTQTEEPKDKTQIQVPATLLVTESISDFISLVGSFGKACDLWGLGKVWYFGSTLCSEAGFTSNFFWLAEDETARLYAEFLESFQGDTTPGSKAFVRGGTINPNEKLKADSEGEKSKDGVSGSKKGSRYVPSFIPPPLATKGRESEKKEEKPKEEKGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRNTEHSTISRFDELPDDFDPSGKLPGSLDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSNEGATVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVTSPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPSGKSPEHEKVSGSTHAAGRSRRLEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIAAKVARLMLVSDVLHNSSAPVRNASAYRTKFEAALPDIMESFNDLYRSVTGRMTAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTLFHSICGDAPEIEKNIHSEDTVDGSKSNQDSALAMGLGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRCYELDDELKYAQNQASSGRYSSSRRETSIETEPVGFSGWNQYGEDDLHSQDKGSVSLAQTLPIPHPELKAFTKKEKNDPVLPASKWAREDDDSDDEQKGREKGLGLSYSSSGSENAVDGTIKADELESVADTSISAPADSGMNEEQRLYIASSHFSVQLYNSSSRYVVFGIVHVLQKLRRLEVALIEYRESLEERGIKNLEEVERKVTLHRKRLQAEFGLSDSGEDGQGRRTSSERRDMARKRHRSHSRSHSPPRRSSGRDREREHDADRDRDRQRDRGDLFQTRQTGDFSLVDPYQQLLVLAIQVPRSVFSIKRLTIPENPNVPELIDGTQYLFRLCGCIGSKLDLKKFEVLLTYAIMGHVDLDVPVKSNNSSKICFNIDVALNGRTGLYGLDTHYCILSLISICRAVIATAPDAGQLISMLLQLVNAKKTIGVGVFTGYSLLLTSLSIPEDVKVIWIFTGIA 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1740 1199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 318 IPR000504 GO:0003723
Lele26g1740 1199 MobiDBLite consensus disorder prediction 747 770 - -
Lele26g1740 1199 MobiDBLite consensus disorder prediction 469 499 - -
Lele26g1740 1199 Gene3D - 501 648 IPR008942 -
Lele26g1740 1199 SUPERFAMILY RNA-binding domain, RBD 238 336 IPR035979 GO:0003676
Lele26g1740 1199 SMART rrm1_1 245 321 IPR000504 GO:0003723
Lele26g1740 1199 MobiDBLite consensus disorder prediction 972 988 - -
Lele26g1740 1199 MobiDBLite consensus disorder prediction 803 851 - -
Lele26g1740 1199 ProSiteProfiles SAP motif profile. 695 729 IPR003034 -
Lele26g1740 1199 MobiDBLite consensus disorder prediction 126 141 - -
Lele26g1740 1199 Gene3D Vaccinia Virus protein VP39 1141 1194 IPR029063 -
Lele26g1740 1199 Pfam CID domain 508 636 IPR006569 -
Lele26g1740 1199 Coils Coil 181 201 - -
Lele26g1740 1199 Pfam O-methyltransferase 1145 1193 IPR002935 GO:0008171
Lele26g1740 1199 Gene3D - 909 956 - -
Lele26g1740 1199 SMART cwf21_2 907 954 IPR013170 -
Lele26g1740 1199 PANTHER RNA PROCESSING PROTEIN LD23810P 88 969 - -
Lele26g1740 1199 Coils Coil 932 952 - -
Lele26g1740 1199 Pfam Surp module 391 443 IPR000061 GO:0003723|GO:0006396
Lele26g1740 1199 CDD RRM_SR140 243 326 IPR035009 -
Lele26g1740 1199 ProSiteProfiles CID domain profile. 501 646 IPR006569 -
Lele26g1740 1199 SUPERFAMILY Surp module (SWAP domain) 367 448 IPR035967 GO:0003723|GO:0006396
Lele26g1740 1199 ProSiteProfiles SURP motif repeat profile. 393 436 IPR000061 GO:0003723|GO:0006396
Lele26g1740 1199 MobiDBLite consensus disorder prediction 110 240 - -
Lele26g1740 1199 MobiDBLite consensus disorder prediction 747 787 - -
Lele26g1740 1199 MobiDBLite consensus disorder prediction 989 1016 - -
Lele26g1740 1199 Gene3D - 157 327 IPR012677 -
Lele26g1740 1199 MobiDBLite consensus disorder prediction 954 1016 - -
Lele26g1740 1199 SUPERFAMILY ENTH/VHS domain 505 644 IPR008942 -
Lele26g1740 1199 SMART 558neu5 508 643 IPR006569 -
Lele26g1740 1199 MobiDBLite consensus disorder prediction 803 837 - -
Lele26g1740 1199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 325 IPR000504 GO:0003723
Lele26g1740 1199 SMART surpneu2 391 445 IPR000061 GO:0003723|GO:0006396
Lele26g1740 1199 MobiDBLite consensus disorder prediction 480 499 - -
Lele26g1740 1199 Coils Coil 506 526 - -
Lele26g1740 1199 MobiDBLite consensus disorder prediction 160 227 - -
Lele26g1740 1199 Gene3D Surp module 379 448 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1740 Lele-ChrLele26 20932417 20946941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1740 1142 1194 Monolignol Biosynthesis Gene Families AT4G26220 75.472 3.23e-17 80.5