Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1710 ATGAATCCGTTAACCCTAGTGAAGCGCTTTCAGAATATCAATTCCAAAGAAGCCTCTCTGGGCATCAGTGAGGAGGCTTCCTGGCACGCTAAATACAAAGATTCTGCTTATGTATTCGTGGGTGGCATTCCCTTCGATCTAACTGAGGGCGATCTCCTTGCAGTTTTTGCTCAATATGGGGAGGTTGTTGATGTAAATCTTGTCAGGGACAAAGGTACTGGGAAATCGAAAGGTTTTGCATTTCTTTCATATGAAGATCAAAGGAGCACAAATCTTGCCGTAGGTTGGGCTCTCTGTCTTGTCATAATATATTATAATTTGAATGGAGCACAGATTTTGGGTCGAGTCATTAGGTTTGAACAAGTTACGAAATATAAAAAGAAAGAAGAGGAAGATGAGGAGACAGAGAGGAAGAAAAGGGAGGAACGAGGTGTTTATCGAGCTTTCCAAAGAGGTGAATGTACACGTGGAGCTAGCTGCAAATTTTCTCATGATGAGCGAGCCTTGTTTGATGGTCAGACCTGA 525 0.4248 MNPLTLVKRFQNINSKEASLGISEEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLSYEDQRSTNLAVGWALCLVIIYYNLNGAQILGRVIRFEQVTKYKKKEEEDEETERKKREERGVYRAFQRGECTRGASCKFSHDERALFDGQT 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1710 174 Gene3D - 6 121 IPR012677 -
Lele26g1710 174 Gene3D - 127 170 - -
Lele26g1710 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 124 IPR000504 GO:0003723
Lele26g1710 174 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 153 - -
Lele26g1710 174 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 165 IPR000571 GO:0046872
Lele26g1710 174 ProSiteProfiles Zinc finger C3H1-type profile. 140 167 IPR000571 GO:0046872
Lele26g1710 174 SUPERFAMILY RNA-binding domain, RBD 28 126 IPR035979 GO:0003676
Lele26g1710 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 94 IPR000504 GO:0003723
Lele26g1710 174 SMART rrm1_1 37 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1710 Lele-ChrLele26 20655814 20657116 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1710 38 143 Eukaryotic Initiation Factors Gene Family AT1G71770 26.415 2.55e-06 44.7