Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1701 ATGAACCATACACCTTCTTCTTCCTCCTCTTCGTCTTCATCAGCTTTGGCTTCTCATGTTCAAGCAGAGGAAGCTGAGAATTCAAATGAACAGAATCATGAACCACTTCCTTCTCTGTCGTATAGGATTAACATTTCCATGGCCAATTCATATTTTGCTGCTAGTAGGGATGATGTCTGGTCTTGCCTCATCATTCTCGTCACTTTTTGGTTGGTCGCAACAATGGGTCTGGTTGTTGGTATTTATGGAACAACAACTTTGCAGTTAGGTCCTTACTCCTCTGTTTTAATACAAGTCAACTCAATGTTTGTACAATCTATTATGGTGGAACAAGTTGATGAACCAAAACCTGGGATAATGCTATATGGATTTGATGAAGCACCTGCCCTTGATGTCAAAACCAACTGGTCTAGCTCATATAAAGGATTTGTACCACACAACTTTTACAAGGCAAATTTTACCTTTTTTCCTTGTTTAGAATGGATATTCTACCTGAACAAACAGTCTCAGTTAGATATCTTTTACAGTGTCAAGTCCCCAAGATTCTCACATTTAACTCTTGCTATTGCTCAAGGCAGAGAACAGCTTTTTGAGTGGATAGAGAAGCCCTCATTTCCCAACACAACATTATCTTGGAATATTATTTCTGGGAGGGACAAGATCAGCCAGAAAATATCAGATCCATTTTCTTATTATGTAGCACTTGGTAACTTACACACTCAAGATGTGGAGGTAGAAATGAAGTTCAGTGTGAGTGGAGTTGTGTACAATACAAGCAGTGCAAGCAGCAGATGTTCACCAGATAGCAGTTTGTGTAGATTACCCCTTTATCTTCCACAGTCTGGCTCTGCTGTTTTGACTACTCCACCTCCTCTACAGGGAAATTTTGAGGATGAATGGTTTCATGTGAAACTGTCGTATGCACCAAGGTGGATCACTTACTTTGTAGCATCAGGTATGATGACTGTACTAATCTTCTTCCTCTTGAGATGCGGCAATGTCTTCCAAAGACATGATGGTTCAGGCACAGAAAGCTTGCAACAAGTTCATGTAGTTTCAGAACGAGCACCGTTGCTGGTTAACTACAAAAACGACGACGCTTCGAGCTTGGGTTCGTCTTACCAGTCTTTCACTAGTGAGGAGGAAGAAGATCTCACAGCAGGGAAGCCATTAATGGAGGAAATGAAGCATTTATGTGTGATTTGTTTTGATGCTTCTAAAGATTGCTTCTTTCTTCCATGTGGCCATTCTGCAGCTTGCTTTCAATGTGGAACAAGGGTTGTTGATGAAACCAGTCCTTGTCCCATATGCAGAAGGAAAATTAAGAAAGTGCGAAAAATTTTTAATGTTTAA 1353 0.4035 MNHTPSSSSSSSSSALASHVQAEEAENSNEQNHEPLPSLSYRINISMANSYFAASRDDVWSCLIILVTFWLVATMGLVVGIYGTTTLQLGPYSSVLIQVNSMFVQSIMVEQVDEPKPGIMLYGFDEAPALDVKTNWSSSYKGFVPHNFYKANFTFFPCLEWIFYLNKQSQLDIFYSVKSPRFSHLTLAIAQGREQLFEWIEKPSFPNTTLSWNIISGRDKISQKISDPFSYYVALGNLHTQDVEVEMKFSVSGVVYNTSSASSRCSPDSSLCRLPLYLPQSGSAVLTTPPPLQGNFEDEWFHVKLSYAPRWITYFVASGMMTVLIFFLLRCGNVFQRHDGSGTESLQQVHVVSERAPLLVNYKNDDASSLGSSYQSFTSEEEEDLTAGKPLMEEMKHLCVICFDASKDCFFLPCGHSAACFQCGTRVVDETSPCPICRRKIKKVRKIFNV 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1701 450 ProSiteProfiles Zinc finger RING-type profile. 399 438 IPR001841 -
Lele26g1701 450 MobiDBLite consensus disorder prediction 1 35 - -
Lele26g1701 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 449 IPR013083 -
Lele26g1701 450 SMART ring_2 399 437 IPR001841 -
Lele26g1701 450 SUPERFAMILY RING/U-box 398 444 - -
Lele26g1701 450 Pfam Domain of unknown function (DUF4792) 119 196 IPR032008 -
Lele26g1701 450 PANTHER OS05G0521000 PROTEIN 44 449 - -
Lele26g1701 450 Pfam Domain of unknown function (DUF4793) 221 327 IPR032010 -
Lele26g1701 450 Pfam Zinc finger, C3HC4 type (RING finger) 397 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1701 Lele-ChrLele26 20557978 20562430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1701 399 447 C3H Transcription Factor Family AT3G06140 38.776 2.27e-06 47.8