Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1697 ATGCGGGTTGATGATACAAGGGCTTGTGTTTCCATGAGGAGTTATATCAGAAATCTCAAGCGATGTGTTGAGGAGGAGATTCAAATTCAACGGTCATTGCTTGTGATACAAGGTATAGTAACTGAGGAGATTCAAATTCAACGGTCATTGCCTGTGATACAAGGTATAATTGTGTTGAGGTATTCAGAAGCTGAAGCTTTTCCAGCAAATGTCTCTTCGTCGGTGGCTTCTGCCGTACAATCCATCCACCGTTCATTGACTGATCTCTGCGACCTGGAACACCATTACTCATTCGAGAACCCCCGACGGTTCTCGGGCTTGGCCCTGCGACTTCAGATTGTCGTCAATCAGCTGCTCCTGTCGTTTCAATCACCGTCGCTGGAGACCTTCCCGTCGTCGGTTCAGACCGCCCTGAAAGGAATGTCCGGCGATCTGTCCAAGGCTGCGGAAGTTGTTTCCGTTTATGAGAAAAGCAGCAAGATATTCGTCTTGATCAACTGCAAGTCCCTCTACTTATCCCTTCAGGAGCACACTTTCTCCATAGGAGGATGGCTCGCCTTGCTCGATGAGGCTCTTCAAGATGACCCTGACCTCCAAAAGAAAGCTTCTAATCTTTCCAGAGACATGAAGCTCGCTCAGTTCAGAGTTACAGAGATCGAAGAGAGAGTTCAATGTACGCTGGAAAAAGAAGGGGTAGGAAGACCAACGACCAAGGCGGTACAGAGTGCTATTGTCATGGATTTGGCTCGGGCTTTGGGTATTGACCCAGGTGATCATACAGAGTTATCCAACGAAATAAAGCTGTTCAAGAATGACCTATTGCGCGTAAATTCTGTATCAGAGCGGCGGATTTTAGCTTCCCTTGAAAGGATTTTGAATAACTGGTCAATTGAACCTGACATTGAGACTCGAAAATTGGACTTCGACCTAGAAGACGATTCAGCGATTTCTCCCTTAAAAAATTTTCTTTGCCCATTGACCAAGGAAGTGATGAAGAATCCTGTGGTTCTGGAAACTTTCCAGACCTATGAACGGACTGCTATAGAGTACTGGTTCGAGAGGTGTATTCAAGATGCTCGTGACCCAACTTGTCCTGTAACTGGTAATGTTCTCAAGTCCTTGGAACTGAAACCCAATATTGGATTGTCAGGGGCAATAGAAGAGTGGGTTAACAGGGTTGTGGAGTATCAAGTCAAATCTGCTGCTGAGCACTTGATTGAGGATCCACTTTGTATAGATCATGTTGAGCAAGCTTTGGATAACATTTATAGGGTTTCAGAAGAGAATCCTGCTAGCAGATATGTAATCAGGAATGCTGAAATTGTACAACTGATAATGAAGCTTCTTACTAATAGCTCAAAAATAATTGGATCACGGTTGAGAAGTAAAGCTTTGATGGCTTTAGTTAGTATGGCTACAGATGAAGAAAGCAAGAAAATAATGCTTGAAGGGAGTATCACAAGATTGGCTGTACATAGTCTTACTGGTAGCTCAGAGAAAGAGAGGGAGTATGCTGTGAAGTTATTACTGGATTTCTCCGGCGATGAAGCTTATTGCATAGGAGTTGCATCAGAGAAAGGGGCATTGGTTCTCCTTACAAGTATGGCAGGAAATCTAGAATTTCCTGCTTTGTCCAAGTTAGCTGAGGAAGTCTTAAGGCAGTTGGAGAGGGTGGAGGATAATGTCCAACGTTTAGCAGCATCTGGAAGATTTGAACCTTTAATTTCAAGGCTGCATGGCGGTCCTGATTCTGTGAAGATAGAGATGGCGTCTCTGCTGGGAAGGATGACCTTGACAAACAACAATAAAGAGCAAATTGCCAGGCAAAGTGCTGGAGTACTTGTTGACCTGTTGTCGAAGCCAGAAGGAAGAGAACCAAGCCTGCAAGCATTATATAACTTGTCAGGATTGGATGACAACGCAACCATCCTCGTCAAGTCTCCAGTCTTTCCATCTCTTATTGATGTTCTTTTTGATGAGCAGGAACCTTCAGATGAAATCAAAACATTATCTGCTTCGACAATTGCAAATATAGTATCAAAGCCAGGGCGATGGGAATTAGCATCTGCCGACATGAAGGGGAATTCAATGCAGTCAGAAAATATAGTTTTCAGATTTCTGCAACTTTTAAACTCAGTATCATCTCAATGTCAAGTATATGTTCTTCGCATTCTCTATGGAATAACCTCATCCCCACAGGCATCAGAGTCAGTGGCTTTGCATATAAAATCTGGGGATGGCTTCAAAACGGTCACACAATTTCTTGAAAACCCAGAAGTCGAACTCAGAATATTTGCTTTGAAGCTTTTGAGACTACTATCTGAACTGTTCAGTCAAGATCTAGGAAATGAGCTGAGACTTTCCAACAAGCTCACAATACTCAAAGAAAAAATGTTAGATGATCAATCTGCAGAGGAAGAGAGAGCAACAGCAGCATGTATACTTGCCAACCTTTCCTTAACAGAGAATGAAGTAAAATCACTTTTAGGAGGTGATTTTATTAAATGGATCGTCACCACTCTCAAGAACCAGAGGCGCAGCTCAAATGCAAGGATTTCACAGACTTCACTAAGCTTACTGGAAGGTCTTCTCGGTCTCTTACTTCACTTCACTAGGAACCTCGATGACCAAACTCTTACCGTTGTCAGAGAAAACCATCTCATGACCATTTTCTGTGAACAGCTGGAATATACTTCCAAACCGAAGGTAAAAAGACTCGCTGCTCTCGGATTAAAAAGCTTATCAGAAACTGGAAGGAGATTTATTTCTAGGGACAATGATCCCTCACCTTCTAATGGGTTCTGCTCTCCCTTCTTTTTCATTTGTGGGAGGAACTCTAATCGGAACCTTTCATGTCTGATTCACGACAGTCCCTGCAAGGAAGAAAGTCAGTTGTGCCTGCTAATGAGCAACTGTATAAAGCCTCTAACTGATCTCCTCAATGACAACAATGAAACTAGTGTTCAAGTTGCTGCAGTGGAGGCACTTTCAACATTAGTATTGGATTATTCATCGAATACTTTCAAGAGAGCCGCCGATGAGCTTGAGCAATTGGGTGTGGTTGATTCTGTGATCAATCTTTTCACAGAGGCTAGATCTGGGGAGCTTCAAGAGAAGACAGTTTGGATTATAGAGAAAATATTGAGAGTGGAAAATCACATTCCTAAGCACTCGCTTAATCAGTCTCTTGTGAGGGGCTTGGTTGAAGCCTTTAAGCATGGGAATCCCAACACCAAGTTGCTTGCTCAACATGCTTTAACCTGCCTAAAGCAAATATCATTTCTAAGTGAGAAGATATCTAGTGAACCTAGAGCTAGAAGGTAG 3324 0.4293 MRVDDTRACVSMRSYIRNLKRCVEEEIQIQRSLLVIQGIVTEEIQIQRSLPVIQGIIVLRYSEAEAFPANVSSSVASAVQSIHRSLTDLCDLEHHYSFENPRRFSGLALRLQIVVNQLLLSFQSPSLETFPSSVQTALKGMSGDLSKAAEVVSVYEKSSKIFVLINCKSLYLSLQEHTFSIGGWLALLDEALQDDPDLQKKASNLSRDMKLAQFRVTEIEERVQCTLEKEGVGRPTTKAVQSAIVMDLARALGIDPGDHTELSNEIKLFKNDLLRVNSVSERRILASLERILNNWSIEPDIETRKLDFDLEDDSAISPLKNFLCPLTKEVMKNPVVLETFQTYERTAIEYWFERCIQDARDPTCPVTGNVLKSLELKPNIGLSGAIEEWVNRVVEYQVKSAAEHLIEDPLCIDHVEQALDNIYRVSEENPASRYVIRNAEIVQLIMKLLTNSSKIIGSRLRSKALMALVSMATDEESKKIMLEGSITRLAVHSLTGSSEKEREYAVKLLLDFSGDEAYCIGVASEKGALVLLTSMAGNLEFPALSKLAEEVLRQLERVEDNVQRLAASGRFEPLISRLHGGPDSVKIEMASLLGRMTLTNNNKEQIARQSAGVLVDLLSKPEGREPSLQALYNLSGLDDNATILVKSPVFPSLIDVLFDEQEPSDEIKTLSASTIANIVSKPGRWELASADMKGNSMQSENIVFRFLQLLNSVSSQCQVYVLRILYGITSSPQASESVALHIKSGDGFKTVTQFLENPEVELRIFALKLLRLLSELFSQDLGNELRLSNKLTILKEKMLDDQSAEEERATAACILANLSLTENEVKSLLGGDFIKWIVTTLKNQRRSSNARISQTSLSLLEGLLGLLLHFTRNLDDQTLTVVRENHLMTIFCEQLEYTSKPKVKRLAALGLKSLSETGRRFISRDNDPSPSNGFCSPFFFICGRNSNRNLSCLIHDSPCKEESQLCLLMSNCIKPLTDLLNDNNETSVQVAAVEALSTLVLDYSSNTFKRAADELEQLGVVDSVINLFTEARSGELQEKTVWIIEKILRVENHIPKHSLNQSLVRGLVEAFKHGNPNTKLLAQHALTCLKQISFLSEKISSEPRARR 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1697 1107 SMART Ubox_2 321 389 IPR003613 GO:0004842|GO:0016567
Lele26g1697 1107 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 89 1097 - -
Lele26g1697 1107 Coils Coil 548 568 - -
Lele26g1697 1107 SUPERFAMILY RING/U-box 312 392 - -
Lele26g1697 1107 Gene3D - 950 1104 IPR011989 -
Lele26g1697 1107 SUPERFAMILY ARM repeat 866 1090 IPR016024 -
Lele26g1697 1107 Pfam U-box domain 321 391 IPR003613 GO:0004842|GO:0016567
Lele26g1697 1107 SUPERFAMILY ARM repeat 407 916 IPR016024 -
Lele26g1697 1107 CDD RING-Ubox_PUB 322 368 IPR045210 -
Lele26g1697 1107 Gene3D - 405 919 IPR011989 -
Lele26g1697 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 404 IPR013083 -
Lele26g1697 1107 ProSiteProfiles U-box domain profile. 317 396 IPR003613 GO:0004842|GO:0016567
Lele26g1697 1107 SMART arm_5 1008 1049 IPR000225 GO:0005515
Lele26g1697 1107 SMART arm_5 960 1001 IPR000225 GO:0005515
Lele26g1697 1107 SMART arm_5 599 636 IPR000225 GO:0005515
Lele26g1697 1107 SMART arm_5 637 680 IPR000225 GO:0005515
Lele26g1697 1107 SMART arm_5 429 473 IPR000225 GO:0005515
Lele26g1697 1107 SMART arm_5 874 916 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1697 Lele-ChrLele26 20506766 20513892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1697 322 1096 U-box Gene Family AT1G20780 30.088 2.11e-91 309