Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1686 ATGGTGTTTCTATTTTTTGCTTTATTGTGCATTCTGGAGCTATGTATTTGTGTTCCTGACTTTGGCAAATTTGTGACCTTTGAGCGACTGGGTTATTATGATTTTCTTCTGGTGTTTCATTCATCGAGTGATTTATTTAATACTTGTTCCATTGTCTGTGTGCATGCTCACTATCAAAGCATGGTTGGAGATTCATGGTCTAGGATATGCGTTAAGAATCTACCAAAATATGTTGCAGAGGATCGTCTACGGGACTTATTTTCACAGAAAGGAGAAATAACAGATGTAAAGCTTATGCGCACCAAAGATGGTAAGAGTCGGCAATTTGGTTTCATTGGGTTTCGTACAGAGGATGAAGCCAATGAAGCTATAAAATATTTCAATAGATCCTACCTTGACACCTGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCAGACACTCCTCGTCCATGGAGTCGACATTCATTGAAGAAAGGGGAGAAAGTAATCCAAGGTGGGAAGGCAGATGCTGAAAATAGAAGTACTGCTAAGGCACAAAGAGGTGGAGAGAATTTGAAAGAGAGCACTGACATTGATGATCCGCAGCTTCAAGAATTCCTCCAGGTTATGCAGCCTTGGGCTAAGACAAAATTGTGGGCAAATGATACATTATCAGTGTTGGATAATGTTAGTGAGATAGCTGAGAATAAAAGCAAGCATATTTCAGTTCCAAAGCATGATGAGTTACTTCAAAGAGGCTCATTAGATGATGGGTCCTCTGATGGCTTATTAGATGATGGGTCCTCAACTGGCTCATCAGATGATGGGTCCTCAACTGGCTCATCAGATGATGGGTCCTCCGATGGTCATGAGTCTCAGAAACCAAATAATCTTGTCCATGATGATGCCATTTCAGATATGGAATATTTCAAGAGTCGGGTGACAAAGGAGTGGTCTGATTCTGAAAATAGTGATGATGATGATGAAGACAACAATGCTTCTGTGAGCAATGATGATGGCAACGAAGAAGACAATGATAGTCATGGCAATGAAGATGAAGAAAATTGTGATGATAAATCTTTGAAGGCAACTGGAAGAGGTGATGCTCAAAACTTAGACCTGTCAGGCCAAGAAGATATCTGTAATAAGGATAGTGACCACTGCAAAAAGGTTGAAGTGAGAGGCCCTTCTAATTCTTCTGGTGACGAAGTACCTGAGCAAGGGGTCCCTTCATCATGTGTGGAAAATGAGAAAGGAGTTTTTGAGTCTTGTCGACTGTTTGTCCGTAATCTGCCATATACAGCCACTGAGGAGGAACTTGAAGAACACTTCAGCAAGTTTGGCACTGTCTCACAGGTTCATCTGGTTGTTGATAAAGATACAAAAAGGTCCAAAGGAATAGCATATATTCTTTACACACTTCCTGAATTTGCTTCCAGGGCAATAGAAGAGTTAGACAATTCAATTTTCCAAGGAAGATTACTGCATGTTTTGCCAGCCGTGCAAAGACCTTCAGATAGCAAGGAAAAGAATACCTCAATGGACCAAAGCTCCAGAACTTTTAAGGAGCAGAGAGAGGAGGAGCGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTATTCATGCGCCCTGACACCGTTGTTGAAAACATTGCTCGTAAATATGGTGTAAGCAAAAGTGATTTACTTGACCGAGAAGCTGATGACCTTGCTGTGCGTATGGCTTTAGGAGAAACTCAAGTGATTGCAGAGACGAAAAAGGTCCTTAAAAATGCTGGCGTGAATGTGGAATCTCTGGAGGAATTTGCCAATGGCAAAAAAGTTGGTGTGAAAAGAAGCAACCATGTACTTTTAGTAAAGAACTTGCCATATGGTTCCTCAGAAAATGAACTAGCAAAGATGTTCGGGAAATTTGGGAGTTTGGACAAAATAATCCTGCCTCCAACAAAGACATTGGCCTTGGTTGTCTACCTTGAACCGGCTGAAGCTCGGGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTTCAAAGATGCGCCATTGTATTTGGAATGGGCTCCTTCCAATGTACTTAGCCAAAGTATAACATCTGAGAACAATGAAAAGAGTGGTGCAATTGGTGAAAATGAGGCCAAACGGCAGATATTGGAACAACATCTGGAAGGAGTATCAGATATGGACATTGATCAGGACAGAGTTGAGGCACGGTCTCTATTTGTCAAGAACGTCAACTTTAGGACATCAGATGAGAGTTTGAAGAATCATTTTAGTGAACACGTGAAAGAGGGAAGAATTTTGAGTGCCAAGGTGAAGAAGCGTTTGAAAAATGGAAAACAAGTTTCTATGGGATTTGGATTTATTGAATTTGATTCTGTGGAGACTGCTACGAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCACTTATTTTACAACTCTGTCAAGTCAAGGACAGACAAGTACCAAAAACAGTTGAGAAGGACAAAAGCTCAACAAAATTACTTGTAAGAAATGTAGCTTTTGAGGCAACAGAGAAGGAATTGAGACAGTTGTTCAGCCCATTTGGCCAGATTAAGAGTTTAAGGTTGCCAATGAAGTTTGGAAATCATAGAGGTTTTGCTTTTGTGGAATATGTTACACAGCAAGAGGCACAAAATGCACTTAAAGCTCTCTCAAGCACCCACTTGTATGGCAGGCATCTGGTGTTGGAGAGAGCAAAGGAAGGCGAGAGTTTGGAGGAACTACGGGCTCGAACTGCTGCGCAATTTAGCGATGAGCAAAATGGATTTCAAAAGTTATCCAAGAAAAGGAAGCACTTGTCAATCTTGGATGAAAGAAATATGAAGTTTGAAAGAATTGCTGAGTAG 2874 0.412 MVFLFFALLCILELCICVPDFGKFVTFERLGYYDFLLVFHSSSDLFNTCSIVCVHAHYQSMVGDSWSRICVKNLPKYVAEDRLRDLFSQKGEITDVKLMRTKDGKSRQFGFIGFRTEDEANEAIKYFNRSYLDTCRITCEVARKVGDPDTPRPWSRHSLKKGEKVIQGGKADAENRSTAKAQRGGENLKESTDIDDPQLQEFLQVMQPWAKTKLWANDTLSVLDNVSEIAENKSKHISVPKHDELLQRGSLDDGSSDGLLDDGSSTGSSDDGSSTGSSDDGSSDGHESQKPNNLVHDDAISDMEYFKSRVTKEWSDSENSDDDDEDNNASVSNDDGNEEDNDSHGNEDEENCDDKSLKATGRGDAQNLDLSGQEDICNKDSDHCKKVEVRGPSNSSGDEVPEQGVPSSCVENEKGVFESCRLFVRNLPYTATEEELEEHFSKFGTVSQVHLVVDKDTKRSKGIAYILYTLPEFASRAIEELDNSIFQGRLLHVLPAVQRPSDSKEKNTSMDQSSRTFKEQREEERKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRMALGETQVIAETKKVLKNAGVNVESLEEFANGKKVGVKRSNHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLSQSITSENNEKSGAIGENEAKRQILEQHLEGVSDMDIDQDRVEARSLFVKNVNFRTSDESLKNHFSEHVKEGRILSAKVKKRLKNGKQVSMGFGFIEFDSVETATNVCRDLQGTVLDGHALILQLCQVKDRQVPKTVEKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVLERAKEGESLEELRARTAAQFSDEQNGFQKLSKKRKHLSILDERNMKFERIAE 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1686 957 FunFam Multiple RNA-binding domain-containing protein 1 606 708 - -
Lele26g1686 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 735 818 IPR000504 GO:0003723
Lele26g1686 957 CDD RRM6_RBM19_RRM5_MRD1 834 908 - -
Lele26g1686 957 FunFam RNA-binding motif protein 19 61 165 - -
Lele26g1686 957 SUPERFAMILY RNA-binding domain, RBD 612 700 IPR035979 GO:0003676
Lele26g1686 957 MobiDBLite consensus disorder prediction 317 347 - -
Lele26g1686 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 420 498 IPR000504 GO:0003723
Lele26g1686 957 CDD RRM4_RBM19_RRM3_MRD1 615 686 - -
Lele26g1686 957 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 716 828 - -
Lele26g1686 957 SMART rrm2_1 421 494 IPR003954 GO:0003676
Lele26g1686 957 SMART rrm2_1 736 814 IPR003954 GO:0003676
Lele26g1686 957 SMART rrm2_1 68 140 IPR003954 GO:0003676
Lele26g1686 957 MobiDBLite consensus disorder prediction 240 407 - -
Lele26g1686 957 FunFam Multiple RNA-binding domain-containing protein 1 829 934 - -
Lele26g1686 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 834 910 IPR000504 GO:0003723
Lele26g1686 957 Gene3D - 732 825 IPR012677 -
Lele26g1686 957 CDD RRM5_RBM19_like 735 816 IPR034423 -
Lele26g1686 957 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 350 512 - -
Lele26g1686 957 SUPERFAMILY RNA-binding domain, RBD 401 508 IPR035979 GO:0003676
Lele26g1686 957 Gene3D - 57 190 IPR012677 -
Lele26g1686 957 Gene3D - 398 535 IPR012677 -
Lele26g1686 957 MobiDBLite consensus disorder prediction 504 531 - -
Lele26g1686 957 MobiDBLite consensus disorder prediction 147 194 - -
Lele26g1686 957 Gene3D - 826 936 IPR012677 -
Lele26g1686 957 Gene3D - 607 712 IPR012677 -
Lele26g1686 957 MobiDBLite consensus disorder prediction 499 531 - -
Lele26g1686 957 MobiDBLite consensus disorder prediction 259 282 - -
Lele26g1686 957 SUPERFAMILY RNA-binding domain, RBD 54 155 IPR035979 GO:0003676
Lele26g1686 957 SUPERFAMILY RNA-binding domain, RBD 829 912 IPR035979 GO:0003676
Lele26g1686 957 MobiDBLite consensus disorder prediction 375 389 - -
Lele26g1686 957 MobiDBLite consensus disorder prediction 147 170 - -
Lele26g1686 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 615 687 IPR000504 GO:0003723
Lele26g1686 957 SUPERFAMILY RNA-binding domain, RBD 722 820 IPR035979 GO:0003676
Lele26g1686 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 617 679 IPR000504 GO:0003723
Lele26g1686 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Lele26g1686 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 836 903 IPR000504 GO:0003723
Lele26g1686 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 737 811 IPR000504 GO:0003723
Lele26g1686 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 422 492 IPR000504 GO:0003723
Lele26g1686 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 144 IPR000504 GO:0003723
Lele26g1686 957 CDD RRM3_RBM19_RRM2_MRD1 421 494 - -
Lele26g1686 957 SMART rrm1_1 421 494 IPR000504 GO:0003723
Lele26g1686 957 SMART rrm1_1 616 683 IPR000504 GO:0003723
Lele26g1686 957 SMART rrm1_1 68 140 IPR000504 GO:0003723
Lele26g1686 957 SMART rrm1_1 736 814 IPR000504 GO:0003723
Lele26g1686 957 SMART rrm1_1 835 906 IPR000504 GO:0003723
Lele26g1686 957 MobiDBLite consensus disorder prediction 300 316 - -
Lele26g1686 957 CDD RRM1_MRD1 67 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1686 Lele-ChrLele26 20340056 20359070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1686 726 926 Eukaryotic Initiation Factors Gene Family AT1G49760 28.638 1.52e-11 66.2