Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1646 ATGCAGGTATATCCTATGGAGATATCGGCGTTAAACGTGCTTGTTAATGGCATATCCTCGTTTTCGAACTCAAAATTTTCCAGAAACTTGAGCTCAGAACCAATCTTGAAGTATTACGAAAAGGAAGAGGAGATACTTAAGTTGTTAAAGCCAATACTTGAAGCCATCGCTAATACCGATTTAGCTTCTGATGAAGTGCTTCTGAAGATATTTGAAGAACTGAATCAGGCTGTGCAGGAACTAAGGGAGCTTTACGAGAGTTGGCAACTATTGTGTAGCAAAATTTACATTGTTCTGCAAGTTGAATCCTTGATATCTAAGATTCAGATTTTGGCACTCAACATTTTCAAGCAACTGAAGGCTTCCCATCAATGTCTCCCTAATGAATTAAGTTCTTCACACATAGAGCATGGTTTATTCCAGCACTGTATTGAGAATATAAAAAAATTGGAACATGAAGAAGAAACATCATCTATCATCAAGGAAGCTATCATGGAACAAGTAGAAGGCTTAGGACCAAGTTCAGAGGTCCTTGAAAAACTTGCTGAGAACTTAGGCCTGAACTCTAATCAAGATCTTCTAATTGAGGCTGTGACCCTTGAAAAGTTGAAGGGGAATGAAGAACAGAATGAAAATACCACAGAAGCTGAATATCTCAACCAGATAATTAATCTTTTAACTTGCATGCATGAGAGACTTATAATGCTCAAGGATGCTCAGATTTCTAGCAAAGTTCCAGTACCTGCAGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGAAAGATCCTGTAATTGTGTCGTCGGGGCAAACTTATGAGCAAACTTTCATTAAGAACTGGATCGATCTCGGGCTTACCATTTGTCCGAAGACGCGTCAGACTTTGGCTCATACCAACCTGATACCAAATTATACTGTAAAGGCATTGATTGCAAATTGGTGTGAATTGAACAATGTCAAGCTAGTTGATGATCCTATAATAGTTTCCACAAACTTGAATCATCATTGCAGTTCAACTTCAGAAGGTTCTTCATCAAGTGATGACATGGCTTGTAGCCAAAGTTTGAAAATTTTAAGAATATCACAAAAAAGTTCTGATGATAACATGTCTGCAGCTAGCTCAGATGAAATGAGGGTGGATTTAGATGATTCCAATTCACTTTTGAATGAAAAGTTTCCTCAAGGAACAAAAGGTCAAGGCAATAATAATGCTTCTCAGCCATTGGACAATTCAGGTGATAATAGAGATTCTTCTATGGAGGTTAAGCCGAAGTCAGATATGGTTAGTGATTCTGTCTTAAAACCTCAGAGAGAACTCGATTTTTCGCCTCCATCATTAGAGGCAAGGTCTCAAATCTCAATTAGCCCTTCTGGTATTGAAACCCGGGTTCTGAATTTGGCTAAAGACTTGAAGAGCTCTTCAATTGAAACTCAGAGAGAAGCAACATCAGAACTTCGCCTTCTTTCTAAGCACAATATGGAAAATAGAATTGTGATTGCAAATTGTGGAGTGATTAGTTTATTAGTTGACGTACTCCAGTCAACTGATACAAAGGTCCAAGAAAATGCAGTTACAGCACTTCTAAACTTGTCAATCAATGATAATAACAAAATCTCAATTGCAGATGCTGGTGCAATTGATTCTCTAATTCATGTTCTTGAAACAGGAGGTTCTGAAGAAGCCAAGGAGAATTCAACAGCCACACTTTATAGTTTATCAATGATGGAAGAAAATAGGATTAGGATAGGGAGATCAGGGGCAATTAAGCCATTGGTCGATTTACTAGCAAATGGGAGTCCAAGAGGGAAAAAAGATGCTTCCATTGCTTTGTTCAGCCTATCGATATTTCACGAAAACAAGGGTCGAATTGTGCAAGACGGCGCAGTGAAGCACCTCGTGGAGTTAATGGATCCGGCGGTCGGAGTGGTAGACAAGGCGGTGTCTGTTTTAGCAAATCTTGCATCAATTCCTGAAGGAAGAACTGAAATTGGTCATGAAGGTGCTATTCCTGTTCTAGTTGATATAATTGAATTAGGTTCTGCAAGAGGCAAGGAAAATGCAGCTGCCACTCTTCTACATATTTGCTCAAATAGTCCCAGGGCTAAAGAAAAAGCACAAGCTCTACTTAACCATTGTAGAAGTCAAAGGCACGGTAGTGCTATAAGAGGTGGGAAGAAACATCTTCATTGA 2190 0.39 MQVYPMEISALNVLVNGISSFSNSKFSRNLSSEPILKYYEKEEEILKLLKPILEAIANTDLASDEVLLKIFEELNQAVQELRELYESWQLLCSKIYIVLQVESLISKIQILALNIFKQLKASHQCLPNELSSSHIEHGLFQHCIENIKKLEHEEETSSIIKEAIMEQVEGLGPSSEVLEKLAENLGLNSNQDLLIEAVTLEKLKGNEEQNENTTEAEYLNQIINLLTCMHERLIMLKDAQISSKVPVPADFCCPLSLELMKDPVIVSSGQTYEQTFIKNWIDLGLTICPKTRQTLAHTNLIPNYTVKALIANWCELNNVKLVDDPIIVSTNLNHHCSSTSEGSSSSDDMACSQSLKILRISQKSSDDNMSAASSDEMRVDLDDSNSLLNEKFPQGTKGQGNNNASQPLDNSGDNRDSSMEVKPKSDMVSDSVLKPQRELDFSPPSLEARSQISISPSGIETRVLNLAKDLKSSSIETQREATSELRLLSKHNMENRIVIANCGVISLLVDVLQSTDTKVQENAVTALLNLSINDNNKISIADAGAIDSLIHVLETGGSEEAKENSTATLYSLSMMEENRIRIGRSGAIKPLVDLLANGSPRGKKDASIALFSLSIFHENKGRIVQDGAVKHLVELMDPAVGVVDKAVSVLANLASIPEGRTEIGHEGAIPVLVDIIELGSARGKENAAATLLHICSNSPRAKEKAQALLNHCRSQRHGSAIRGGKKHLH 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1646 729 SMART arm_5 656 696 IPR000225 GO:0005515
Lele26g1646 729 SMART arm_5 533 574 IPR000225 GO:0005515
Lele26g1646 729 SMART arm_5 575 615 IPR000225 GO:0005515
Lele26g1646 729 SMART arm_5 616 655 IPR000225 GO:0005515
Lele26g1646 729 SMART arm_5 492 532 IPR000225 GO:0005515
Lele26g1646 729 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Lele26g1646 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 587 IPR000225 GO:0005515
Lele26g1646 729 MobiDBLite consensus disorder prediction 387 414 - -
Lele26g1646 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 503 545 IPR000225 GO:0005515
Lele26g1646 729 CDD RING-Ubox_PUB 251 293 IPR045210 -
Lele26g1646 729 Gene3D - 439 721 IPR011989 -
Lele26g1646 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 627 668 IPR000225 GO:0005515
Lele26g1646 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 325 IPR013083 -
Lele26g1646 729 Coils Coil 71 91 - -
Lele26g1646 729 PANTHER U BOX DOMAIN-CONTAINING 34 709 - -
Lele26g1646 729 SUPERFAMILY RING/U-box 244 321 - -
Lele26g1646 729 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Lele26g1646 729 SUPERFAMILY ARM repeat 466 702 IPR016024 -
Lele26g1646 729 Pfam Armadillo/beta-catenin-like repeat 494 531 IPR000225 GO:0005515
Lele26g1646 729 MobiDBLite consensus disorder prediction 386 447 - -
Lele26g1646 729 FunFam RING-type E3 ubiquitin transferase 447 705 - -
Lele26g1646 729 FunFam RING-type E3 ubiquitin transferase 246 321 - -
Lele26g1646 729 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1646 Lele-ChrLele26 19562171 19570016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1646 6 723 U-box Gene Family AT5G67340 46.703 0.0 592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1646 26 19562171 19570016 Lele27g0443 27 4825509 4829538 hybridization