Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1557 ATGGCGTCTTCGGATGATGAGGCCGAAGTTCATCCACAATCTGTGTCAAATTACCATTTTGAAGATGATGAGCAAGTGCCTGTTTCATTTTCTGAATTGCCAGTTCAATGGAGTGAATCTGAGGATATAGATGGCGGAAGTGGGCAAGTATTCCTTGACGGTTTTGCAGATAATGGGCTGCAGAAAGTATTTAAGCATGTCGTTGCATGGAAGTTTGATGTTTCTGGTAAAAAACCTGAGATATCAGTGCTATTAAAGGGTAGACAATGGGTCAAACTTGAGAAGCCAAAGAAGTGGTTTGAGGGTACCATAAGGACGGTTTTAATCACTATTCACTTCCTACATTATGTGCAGAAAAATCCTGAAACATCTGCTAAATCTTTGTGGGGCTACTTGTCTAAGGATTTGAGCTATTTTGAAGTTAGGCCTTCACAAAACGATTTGTTGAACCACTTACCTTTAATTGGTGAAGCTGTTAAAAGGAATGCCATCTTAAATAAGTCCCAGCTTTTACTCATGGTTCTTGAGAATCCGGGGAAAGTCAAAGTGCTTGATGAGGAAGCTGATAATTTAGCAAAGCCAGAGTTTATAGTTGGTGATAATGCCATTGATGAAGCTGATGATATAATTTATGAAGCTGATGAAGAGTCAGATAAAGATGATGAGTTGTTTGATTCTGTTTGTGTATTGTGTGACAATGGTGGTACATTGTTGTGTTGTGACGGAATATGCATGAGGTCGTTCCATGCAACAGAGGAGGATGGTGCAGAGGATGATGCAGATTGTGACTCTCTTGGTTTTACTCAGGAGGAAGTCGATGAGATCCAGAGTTTTATATGCAAAAATTGTGAATATAACCAGCACCAATGCTTTGTATGTGGCAAGTTAGGAAACTCTAATAAATCCTCGCGTGCAGAGGTTTTTAAATGTGATGTTGCAACTTGTGGTCACTTTTACCATCTACACTGTGTTGCAAAAGAACTTGGGAAAAATATTGCTGATGGAGAAAGTTTTATTTGTCCTATTCATTCGTGCTGCGTCTGTAAGGAAAGAGAAGATAAGAAGAAACATGAATTTCAATTTGCTGTTTGTAGGCGTTGTCCTATAGCATATCATCGCAAATGTTTACCAAGGGAAATTGCTTTTGAAGACAACGAAGAGGATATTCCGATAAGGGCTTGGGAAAACCTATTACCAAATAACCGCATACTTATATATTGTTTAGAACATGAGCTTGATGAGGAACTTGGAACTCCAATAAGAGATCATATCCGATTTCCCAAGGTTAAACATGCTGTTGGGGAAATTGATTCTTCCTTAGGGGAAGAGACAAAGCCTTCAACACAAGATAGATTTCTGTCAAACAAAAATAATGTTGACCAAGATGATTCTACATGCAAACGAACTAATCCTGCAGGCTCTACACTGATTCAGAAATCATCTTCTAAGAGAGCTAGTTTAAAGAAAGAGTCTGAACATATCATTTCTGGATCAAATGTCTCAAGGAAACGAAAAGCAAATGATGCGGTACGGAGGCATCTGAATGAAAAGAAGAATTCAATCCCTAAGAAAAGTAAAATCCTCGATGGCAAGAAGAGTCAAGTCTCATTGGGCCAAAGACCGTGTGATGCTTCCATGACCAAGGGTTCTATGAAAATAGAGTCTAGGGAGCGTGAGGTTAATGGAGCTAATAAGTCCCTCCATGTGAAGCGTACTAACAAGGAGTTGAGTAATACTTCCGCTCAACTAGACTCTGATACAGAGAGGAGATTGTTAGATTTGTTCAAAGAAGCTAAATCATCAATTTCTTTGGATGATGTATCAAAAAAGCTCAAATTTGCATCTACTCATGCTTCTTCCTTAAGAACTTGTGTGGAGAAGACCATTACTGCTGGGAAGTTGGAGGGCTCAGTTGATGCTGCCCGAACAGCTCTAAAGAGGCTAGATGAAGGAAAAAGTATTCAGGATGCCGCATCTGTTTGTGATCGTGATATATTGAATCAGATATTTAAATGGAGGGATAAATTGAGAGTGTATCTTGCACCCATTTTGCATGGTAATCGATACACATCCTATGGTCGCCATTTTATACAAGTGGGAAAACTCGAAGGGATTGTTGATAGGCTCCATTGGTACGTCCAAAGTGGTGATACGATTGTGGACTTCAGTTGTGGTGCTAATGATTTTAGCATCCTGATGAAGAAAAAGCTCGAAGAGACTAGGAAGGAATGCTTTTACAAAAACTATGATTTGCTTCCAACAAAGAATGATTTTTGTTTTGAAATGAGGGATTGGATGGAAGTCAAACCGAAGGAGCTGCCTAAAGGTTCACAATTGATTATGGGCCTCAATCCCCCCTTCGGTGTTAATGGAGAGCTCGCTAACAAGTTCATCAATAAGGCTCTTAAGTTTCAACCAAAGCTCCTTATTCTTACCGTTCCGCGAGAGACGGAAAGGTATTTATTTGTCTTCAACACCCTGCCCGCGCCCCCCCCCCCAAAAAAAAACCAACCAAAAAGAAAAAGATCCCCCACTTTTCTCCCTTTCCAATAA 2553 0.3984 MASSDDEAEVHPQSVSNYHFEDDEQVPVSFSELPVQWSESEDIDGGSGQVFLDGFADNGLQKVFKHVVAWKFDVSGKKPEISVLLKGRQWVKLEKPKKWFEGTIRTVLITIHFLHYVQKNPETSAKSLWGYLSKDLSYFEVRPSQNDLLNHLPLIGEAVKRNAILNKSQLLLMVLENPGKVKVLDEEADNLAKPEFIVGDNAIDEADDIIYEADEESDKDDELFDSVCVLCDNGGTLLCCDGICMRSFHATEEDGAEDDADCDSLGFTQEEVDEIQSFICKNCEYNQHQCFVCGKLGNSNKSSRAEVFKCDVATCGHFYHLHCVAKELGKNIADGESFICPIHSCCVCKEREDKKKHEFQFAVCRRCPIAYHRKCLPREIAFEDNEEDIPIRAWENLLPNNRILIYCLEHELDEELGTPIRDHIRFPKVKHAVGEIDSSLGEETKPSTQDRFLSNKNNVDQDDSTCKRTNPAGSTLIQKSSSKRASLKKESEHIISGSNVSRKRKANDAVRRHLNEKKNSIPKKSKILDGKKSQVSLGQRPCDASMTKGSMKIESREREVNGANKSLHVKRTNKELSNTSAQLDSDTERRLLDLFKEAKSSISLDDVSKKLKFASTHASSLRTCVEKTITAGKLEGSVDAARTALKRLDEGKSIQDAASVCDRDILNQIFKWRDKLRVYLAPILHGNRYTSYGRHFIQVGKLEGIVDRLHWYVQSGDTIVDFSCGANDFSILMKKKLEETRKECFYKNYDLLPTKNDFCFEMRDWMEVKPKELPKGSQLIMGLNPPFGVNGELANKFINKALKFQPKLLILTVPRETERYLFVFNTLPAPPPPKKNQPKRKRSPTFLPFQ 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1557 850 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 133 IPR022702 -
Lele26g1557 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 367 IPR013083 -
Lele26g1557 850 MobiDBLite consensus disorder prediction 1 23 - -
Lele26g1557 850 MobiDBLite consensus disorder prediction 829 850 - -
Lele26g1557 850 CDD PHD2_NSD 289 343 - -
Lele26g1557 850 SMART PHD_3 289 344 IPR001965 -
Lele26g1557 850 SMART PHD_3 345 411 IPR001965 -
Lele26g1557 850 SMART PHD_3 227 284 IPR001965 -
Lele26g1557 850 ProSiteProfiles Zinc finger RING-type profile. 290 344 IPR001841 -
Lele26g1557 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 285 IPR013083 -
Lele26g1557 850 MobiDBLite consensus disorder prediction 437 491 - -
Lele26g1557 850 MobiDBLite consensus disorder prediction 530 560 - -
Lele26g1557 850 MobiDBLite consensus disorder prediction 441 482 - -
Lele26g1557 850 CDD PHD3_NSD 344 377 - -
Lele26g1557 850 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1557 Lele-ChrLele26 12138729 12165058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1557 216 324 PHD Transcription Factor Family AT3G14980 31.193 2.98e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1375 01 8454751 8460801 Lele26g1557 26 12138729 12165058 CCT
Lele02g1656 02 20310490 20315900 Lele26g1557 26 12138729 12165058 CCT
Lele03g1386 03 8365550 8369882 Lele26g1557 26 12138729 12165058 CCT
Lele04g1642 04 21244082 21248349 Lele26g1557 26 12138729 12165058 CCT
Lele26g1557 26 12138729 12165058 Lele28g1549 28 12764668 12786204 hybridization