Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele26g1556 | ATGGCGTCTTCGGATGATGAGGCCGAAGTTCATCCACAATCTGTGTCAAATTACCATTTTGAAGATGATGAGCAAGTGCCTGTTTCATTTTCTGAATTGCCAGTGCAATGGAGTGAATCTGAGGATATAGATGGCGGAATTGGGCAAGTGTTCCTTGACGGTTTTGCAGATAATGGGCTGCAGAAAGTGTTTAAGCATGTCGTTGCATGGAAGTTTGATGTTTCTGGTAAAAAACCTGAGATATCAGTGCTATTAAAGGGTAGACAATGGGTCAAACTTGAGAAGCCAAAGAAGTGGTTTGAGGGTACCATAAGGACGGTTTTAATCACTATTCACTTCCTACATTATGTGCAGAAAATTCCTGAAACATCTGCTAAATCTTTGTGGGGCTACTTGTCTAAGTATTTGAGCTGTTTTGAAGTTAGGCCTTCACAAAACGATTTGTTGAACCACTTACCTTTAATTGGTGAAGCTGTTAAAAGGAATTCCATCTTAAATAAGTCCCAGCTTTTACTCATGGTTCTTGAGAATCCGGGGAAAGTCAAAGTGCTTGATGAGGAAGCTGATAATTTAGCAAAGCCAGAGTTTATAGTTGGCGATAATGCCATTGATGAAGCTGATGATATAATTGGTGAAGCTGCTGAAGAGTCAGATAAAGATGAATTGTTTGATTCTGTTTGTGTATTGTGTGACGATGGTGGTACATTGTTGTGTTGTGACGGAATATGCATGAGGTCTTTCCATGCAACAGAGGAGGATGTTAAAGAGGACCGTGCAGATTGTGACTCTCTTGGTTTTACTCGGGAGGAAGTGGATGAGATCCAGAGTTTTATATGCAAAAATTGTGAATATAACCAGCACCAGTGCTTTGTATGTGGCAAGTTAGGAAACTCTAATAAATCCTCGCGTGCTGAGGTTTTTAAATGTGATGTTGCAACTTGTGGCCACTTTTACCATCTACACTGTGTTGCAAAAGAACTTGGGAAAAATATTGCTGATGGAGAAAGTTTTATTTGTCCTATTCATTCGTGCTGCGTCTGTAAGGAAAGAGAAGATAAGAAGAAACATGAATTTCAATTTGCTGTTTGTAGGCGTTGTCCTATAGCATATCATCGCAAATGTTTGCCAAGGGAGATTGCTTTTGAAGACAACAAAGAGGATGTTCCAATAAGGGCTTGGAAAGGCCTATTACCAAATGACCGTATACTTATATATTGTTTAAAACATGAGCTTGATGAGGAACTTGGACCTCCAATAGGAGTTCATATCCGATTTCCCAAGGTTAAACATGCTGTTGAGGAAATTGATTCTTCCTTAGAGGAAGAGACAGAGCCTTCAACACAAGATAGAGTTCTTTCAAACAAAAATAATGTTGACCAAGATGATTCTACATGCAAACGAACTAATCCTGCAGGCTCTACACTGATTCAGAAATCATCTTCTAAGAGAGCTAGTTTAAAGAAAGAGTCTGAACATATCATTTCTGGATCAAATGTCTCAAGGAAACGAAAAGCAAATGATGCAGTAGGGAGGCATCTGAATGAAAAGAAGAATTCAATCCCTAAGAAAAGTAAAATCCTCGATGGCAAGAAGAGTCAAATCTCATTGGGCCAAAGACCGTGTGATGCTTCCATGACCAAGGGTTCTAAGAAAATTGAGTTTGGGGAGCATGAGGTTAATGGAGCTAATAAGTCCCTCCTTGTGAAGCGTACTAACAAGGAGTTGAGTAATACATCCGCTCAAATAGACTCTGATACAGAGAGGAGATTGTTAGATTTGTTCAAAGAAGCTAAATCATCAATCTCTTTGGATGATGTATCAAAAAAGCTCAAATTTGCATCTACTCATGCTTCTTCCTTAAGAACTTGTGTGGAGAAGACCATTACTGCTGGGAAGTTGGAGGGCTCAGTTGATGCTGCCCGAACAGCTCTAAAGAGGCTAGATGAAGGAAAAAGTATTCAGGATGCCGCATCTGTTTGTGATCGTGATATATTGAATCAGATATTTAAATGGAGGGATAAATTGAGAGTGTATCTTGCACCCATTTTGAATGGTAATCGATATACATCCTATGGTCGCCATTTTACACAAGTGGGAAAACTCGAAAGGATTGTTGATAGGCTCCATTGGTTTGTCCGAAGTGGTGATACGATTGTGGACTTCAGTTGTGGTGCTAATGATTTTAGCATCCTAATGAAGAAAAAGCTCGAAGAGACTGGGAAGGAATGCTTTTACAAAAACTACGATTTGCTTCCAACAAAGAATGATTTTTGTTTTGAAATGAGGGATTGGATGGATGTCAAACCGAAGGAGCTGCCTCAAGGTTCACAATTGATTATGGGCCTCAATCCCCCCTTCGGTGTTAATGGAGAGCTCGCTAACAAGTTTATCAATAAGGCTCTTAAGTTTCAACCAAAGCTCCTTATTCTTACTGTTCCTCGAGAGACAGAAAGGCTAGATAATAAACGACCCCCTTATGATCTTGTTTGGGAGGATGAGAACTTTCTGTCAGGCAAGTCATTTTATTTGCCTGGATCACTTGATATTAATGACAGACAAATGGATGATTGGAACAATACGCCACCGATATTTTATCTTTGGAGCCGTCAAGATTGGACTGATAAACACAAGGCGATAGCCCAAGAGCATGGTCATGTTCCCAACCAACATGATGCATTGAAAGAAAAGAGGCTTGATGAAATTTCACCTGCTGATCATATTATGGATGGACAATTCAGGAAAGAGCATTAG | 2751 | 0.3973 | MASSDDEAEVHPQSVSNYHFEDDEQVPVSFSELPVQWSESEDIDGGIGQVFLDGFADNGLQKVFKHVVAWKFDVSGKKPEISVLLKGRQWVKLEKPKKWFEGTIRTVLITIHFLHYVQKIPETSAKSLWGYLSKYLSCFEVRPSQNDLLNHLPLIGEAVKRNSILNKSQLLLMVLENPGKVKVLDEEADNLAKPEFIVGDNAIDEADDIIGEAAEESDKDELFDSVCVLCDDGGTLLCCDGICMRSFHATEEDVKEDRADCDSLGFTREEVDEIQSFICKNCEYNQHQCFVCGKLGNSNKSSRAEVFKCDVATCGHFYHLHCVAKELGKNIADGESFICPIHSCCVCKEREDKKKHEFQFAVCRRCPIAYHRKCLPREIAFEDNKEDVPIRAWKGLLPNDRILIYCLKHELDEELGPPIGVHIRFPKVKHAVEEIDSSLEEETEPSTQDRVLSNKNNVDQDDSTCKRTNPAGSTLIQKSSSKRASLKKESEHIISGSNVSRKRKANDAVGRHLNEKKNSIPKKSKILDGKKSQISLGQRPCDASMTKGSKKIEFGEHEVNGANKSLLVKRTNKELSNTSAQIDSDTERRLLDLFKEAKSSISLDDVSKKLKFASTHASSLRTCVEKTITAGKLEGSVDAARTALKRLDEGKSIQDAASVCDRDILNQIFKWRDKLRVYLAPILNGNRYTSYGRHFTQVGKLERIVDRLHWFVRSGDTIVDFSCGANDFSILMKKKLEETGKECFYKNYDLLPTKNDFCFEMRDWMDVKPKELPQGSQLIMGLNPPFGVNGELANKFINKALKFQPKLLILTVPRETERLDNKRPPYDLVWEDENFLSGKSFYLPGSLDINDRQMDDWNNTPPIFYLWSRQDWTDKHKAIAQEHGHVPNQHDALKEKRLDEISPADHIMDGQFRKEH | 916 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele26g1556 | 916 | SMART | PHD_3 | 226 | 283 | IPR001965 | - | |
| Lele26g1556 | 916 | SMART | PHD_3 | 288 | 343 | IPR001965 | - | |
| Lele26g1556 | 916 | SMART | PHD_3 | 344 | 410 | IPR001965 | - | |
| Lele26g1556 | 916 | MobiDBLite | consensus disorder prediction | 436 | 547 | - | - | |
| Lele26g1556 | 916 | MobiDBLite | consensus disorder prediction | 884 | 916 | - | - | |
| Lele26g1556 | 916 | Pfam | Cytosine specific DNA methyltransferase replication foci domain | 14 | 134 | IPR022702 | - | |
| Lele26g1556 | 916 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 285 | 378 | IPR013083 | - | |
| Lele26g1556 | 916 | CDD | PHD3_NSD | 343 | 376 | - | - | |
| Lele26g1556 | 916 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 223 | 284 | IPR013083 | - | |
| Lele26g1556 | 916 | CDD | PHD2_NSD | 288 | 342 | - | - | |
| Lele26g1556 | 916 | MobiDBLite | consensus disorder prediction | 449 | 481 | - | - | |
| Lele26g1556 | 916 | PANTHER | PHD FINGER-CONTAINING PROTEIN DDB_G0268158 | 5 | 896 | - | - | |
| Lele26g1556 | 916 | ProSiteProfiles | Zinc finger RING-type profile. | 289 | 343 | IPR001841 | - | |
| Lele26g1556 | 916 | MobiDBLite | consensus disorder prediction | 482 | 529 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele26g1556 | Lele-ChrLele26 | 12101574 | 12125674 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele26g1556 | 211 | 323 | PHD Transcription Factor Family | AT3G14980 | 30.973 | 3.17e-06 | 49.3 |