Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1526 ATGAATCACTCGGACATTGAAAATATCGATGAAACTAGTATAAATTGGGAACAAGCTCTGAGTCAGTATGAAATGGTGATGTGCTCGGGGACTAAGACTATGCAAATAGAAGCCATGAAGAAGCTAGCTCGTCTCTCTAAACATGCCCCTGAGAGTTTAATAGTTCGCATCATACCCCATCTTATTGAGAGTCTCGATGACTACAATTCAATTCATTCAGGTTGTTCTCTTCAAAAGGCTTCTGCTTATTGCTTAAAATGTGTAGCTTGTAGAGGTGATGGTGGGTTGGCAAAGGAAATAGGTAGACGTGGTGCAGCAAGTTCTTTGTTATGGTGGTTGCCACATTCCAATGGGGAGTTTCAAGAAGTCCTGATAAAATGTTTGCTTGTTCTTGTTACTTTTTGCAATTCAAGTCGTGCAGTTGTCGCTAGTAATGGCGGTGTAGAAGTTATCATCAGTTTGTTAAATTCTTGTACAGGTGATATTAGACTATACCTTTTGGAAATTTTGAGTGCATTGGCATTGCTGAGGGATGTTAGGAGGGAACTCACTAGATTAGGAAGTCTTAAATTTCTTGTGGAGGCTGCTAGTTGTGGTAGCATGGTTTCTAGGGAAAGAGCTTGTCAAGCAATCGGGTTACTTGGTGTCCCAAGACGCGCCAGGCGTACACTAGTTGAACTAGGAGTGATTCCAGTACTTGTTGAGTGTCTTCGTCATGGAGATCACATAATGAAACTTGTAGCTGGTAATGCCCTTGGTGTGATCTCTGCTCATATTGATTATATTAGATTAGTTGCTCAATCTGGGGTTATCAGTCTTTATGCTGAGCTTATTCAAGGACCTGACCCGTCTGGTAAGGAGATTGCTGAGGATGTATTTTGTATATTGGCTGTTGCTGAGGAGAATGCTGTTGAAATCACCAGACACTTGGTGAGAATTCTTAGAGAAGGTGACGATGAATCAAAGGCATCTGCTGCTGATGTGTTATGGGATCTGGCAAGTTACAAGCACGCAACTTCTATGGTCCGGGAGTCAGGTGTGATTCCAATTCTGGTTGAGCTTTTGCCTAGTGGAAATGAAGATATAAAGCAGAATGTTTCTGGGGCTTGTGCACAACTGAGCTATGATGAGGCAGATAGAATGGCACTTGCTGAATCAGGGGCAATCCCAATTCTCATTGAAATGATGCTGCATGATGAGTTGGAGGAAGTAAGGGATAATGCAGCTGAGGCTCTTGTCAACTTTGCTGAAGATCCTTTGTACCAAGATAGAGTATCTGATGCAATAAGTGTTCCTTCATTTAGAGATATGCAGAACAGATTACTTCACATTCGTGCTTCAAATGAGCATATGGCTAGATCGTTACGAAGGATGACTGATTGGCAGCTGACATGGAGCCCTGATCGTATTTAA 1413 0.4211 MNHSDIENIDETSINWEQALSQYEMVMCSGTKTMQIEAMKKLARLSKHAPESLIVRIIPHLIESLDDYNSIHSGCSLQKASAYCLKCVACRGDGGLAKEIGRRGAASSLLWWLPHSNGEFQEVLIKCLLVLVTFCNSSRAVVASNGGVEVIISLLNSCTGDIRLYLLEILSALALLRDVRRELTRLGSLKFLVEAASCGSMVSRERACQAIGLLGVPRRARRTLVELGVIPVLVECLRHGDHIMKLVAGNALGVISAHIDYIRLVAQSGVISLYAELIQGPDPSGKEIAEDVFCILAVAEENAVEITRHLVRILREGDDESKASAADVLWDLASYKHATSMVRESGVIPILVELLPSGNEDIKQNVSGACAQLSYDEADRMALAESGAIPILIEMMLHDELEEVRDNAAEALVNFAEDPLYQDRVSDAISVPSFRDMQNRLLHIRASNEHMARSLRRMTDWQLTWSPDRI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1526 470 SUPERFAMILY ARM repeat 31 156 IPR016024 -
Lele26g1526 470 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 11 426 - -
Lele26g1526 470 SUPERFAMILY ARM repeat 144 424 IPR016024 -
Lele26g1526 470 Coils Coil 398 418 - -
Lele26g1526 470 SMART arm_5 135 175 IPR000225 GO:0005515
Lele26g1526 470 SMART arm_5 217 257 IPR000225 GO:0005515
Lele26g1526 470 SMART arm_5 376 417 IPR000225 GO:0005515
Lele26g1526 470 SMART arm_5 335 375 IPR000225 GO:0005515
Lele26g1526 470 SMART arm_5 291 334 IPR000225 GO:0005515
Lele26g1526 470 Pfam HEAT repeats 308 412 - -
Lele26g1526 470 Gene3D - 308 449 IPR011989 -
Lele26g1526 470 Gene3D - 17 307 IPR011989 -
Lele26g1526 470 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 346 388 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1526 Lele-ChrLele26 11401435 11402847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1526 158 432 U-box Gene Family AT2G23140 25.442 1.23e-10 62.0