Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1512 ATGGCTGTTTCTTCCATATCTTCTTCGTCATTAGTCCCTTCTTTTTCACTCATCTCATCTTCTTCCCTGAATTCTAAAGCAAACTTCTCCTTTTCATTCTTCCATACTGGTACTAGCACCTTTAAGCTTCAAAGCAGCTCAAAGCCTCTGCTATCATCAACTAGGGTTTATGCTGCTCCCGAAGTGTTGGATTCCCCAGATTCCGCTGAAGTTCCTCCATTAACCCCAGATGAATCCGACTCCACCACTGAGGTTGGAGACTTGGGGACTCCAAGCACCTCGTCTCTTAGCATTGGTGCAGATGCAGATGCTATGGCACCAAAGCAGAAAATTAGAATAAAACTGAGATCTTATTGGGTTCCCCTGATAGAGGATTCATGCAAGCAGATAATGGATGCAGCCAAAAGTACCAATGCAAAAACCATGGGTCCTGTACCATTACCAACTAAGAAAAGAATCTACTGTGTTCTTAAATCTCCACATGTGAACAAGGATGCCCGGTTCCATTTTGAGACAAGAACCCATCAGCGTCTCATTGATATTCTACATCCCACTGCCCAAACAATAGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAACTCTAA 624 0.4343 MAVSSISSSSLVPSFSLISSSSLNSKANFSFSFFHTGTSTFKLQSSSKPLLSSTRVYAAPEVLDSPDSAEVPPLTPDESDSTTEVGDLGTPSTSSLSIGADADAMAPKQKIRIKLRSYWVPLIEDSCKQIMDAAKSTNAKTMGPVPLPTKKRIYCVLKSPHVNKDARFHFETRTHQRLIDILHPTAQTIDSLMQLDLPAGVDVEVKL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1512 207 SUPERFAMILY Ribosomal protein S10 110 207 IPR036838 -
Lele26g1512 207 SMART Ribosomal_S10_2 112 206 IPR027486 -
Lele26g1512 207 Hamap 30S ribosomal protein S10 [rpsJ]. 108 207 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele26g1512 207 FunFam 30S ribosomal protein S10 105 207 - -
Lele26g1512 207 Gene3D Ribosomal protein S10 domain 99 207 IPR036838 -
Lele26g1512 207 PRINTS Ribosomal protein S10 family signature 145 160 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele26g1512 207 PRINTS Ribosomal protein S10 family signature 110 123 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele26g1512 207 PRINTS Ribosomal protein S10 family signature 166 180 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele26g1512 207 Pfam Ribosomal protein S10p/S20e 112 206 IPR027486 -
Lele26g1512 207 ProSitePatterns Ribosomal protein S10 signature. 134 149 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele26g1512 207 MobiDBLite consensus disorder prediction 62 101 - -
Lele26g1512 207 TIGRFAM rpsJ_bact: ribosomal protein uS10 109 206 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele26g1512 207 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 56 207 IPR001848 GO:0003735|GO:0005840|GO:0006412
Lele26g1512 207 MobiDBLite consensus disorder prediction 75 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1512 Lele-ChrLele26 11039138 11041991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1512 109 207 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 32.000 1.32e-07 47.0