Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1461 ATGCATGAAGCTGGTGTAGAGGAAGTTGAGTTACAGGAGCCAGAAGCATCGTGGACTTACTTGAAGGGTTCACGTTATCGAGATAGATATCAACTGCAGGTCCCACAAACCCCTTTGAGTTTCACTTGGTCTTTGCCAATGCCTACTAAATCTGTTGTAGACTTAATAGAGTCATCCTCTGGGGCTCATTTCTCTGGATTTCACATGGATGCTTTAGAGAAAATAAATGCTGGAACAGAGCCTCCAACAACTTCTGTAGCTGACCACATGTTTAATCAACCTTTTGTCATAGGTGTTGCTGGTGGAGCTGCAGCTGGGAAAACTGAAGTTTGTAATATGATTATTCAGCAACTTCATGACCAACGAGTTGTAGTTGTTAATCAGGATTCTTTCTATCATAATTTGACGGAGGAGGAACTTACTAGAGTACAAGATTACAACTTTGATCATCCTGATGCTTTTGATAATGAGCAATTGCTTGGAGTTATGGACAAATTGAAGCATGGACAAGCTGTAGATATTCCAAATTATGACTTCAAGAGTTATAAAAGGGATGCAAATCCAGCTAGACGGGTAAACCCTTCTGATGTAATAATTTTGGAAGGAATTCTTATTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATTTTTGTTGACACAGATGCTGATGTTCGACTGGCTAGGAGGATCAAGCGTGATACGGTTCAGAAGGGTCGGGATATTGGTGCTGTGCTTGATCAGTATTCTAAATTTGTAAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATCATTATTCCCCGTGGAGGAGACAATCATGTAGCAATTGATTTAATTGTACAGCATATACGCACAAAACTTGGTCAGCATGATCTATGTAAAATATATCCTAACCTTTATGTTATTCAATCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATTCTCAAATAAAAACGCATGATTTTGTATTTTATTCTGACCGTTTGATTCGTCTGGTTGTTGAACATGGCCTGGGACATCTACCATTTACAGAAAAACAAGTAATCACTCCGACTGGGTCTGTGTACACTGGTGTCGATTTCTGTAAGAGGTTATGTGGAGTCTCTGTTGTCAGGAGCGGAGAGAGTATGGAGAATGCTTTACGAGCATGCTGTAAAGGCATCAAGATTGGCAAAATTCTTATTCATAGAGAAGGGGAAGGGGATAACAGTCAGCAGCTGATATATGAAAAATTGCCTAATGATATCTCAGATAGGCACGTGTTACTGTTGGATCCCATCCTAGGCACAGGAAATTCGGCTGTTCAAGCAATCTCTTTACTAATAAAAAAGGGCGTGCCAGAGTCCAACATCATATTTCTCAATCTCATATCAGCACCCCAAGGTGTGCATGTGGTCTGCAAAGCGTTTCCCAAAATAAAAATCGTGACTTCCGAGATCGAGTTGGGCCTGAATAAAGACTTCCGTGTTGTACCGGGCATGGGCGAGTTTGGGGACCGGTATTTTGGCACAGATGATGATCAGCAGGTGGTGGTCCCTTCACAGTAG 1581 0.4118 MHEAGVEEVELQEPEASWTYLKGSRYRDRYQLQVPQTPLSFTWSLPMPTKSVVDLIESSSGAHFSGFHMDALEKINAGTEPPTTSVADHMFNQPFVIGVAGGAAAGKTEVCNMIIQQLHDQRVVVVNQDSFYHNLTEEELTRVQDYNFDHPDAFDNEQLLGVMDKLKHGQAVDIPNYDFKSYKRDANPARRVNPSDVIILEGILIFHDPRVRELMNMKIFVDTDADVRLARRIKRDTVQKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQIKTHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVVRSGESMENALRACCKGIKIGKILIHREGEGDNSQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIKKGVPESNIIFLNLISAPQGVHVVCKAFPKIKIVTSEIELGLNKDFRVVPGMGEFGDRYFGTDDDQQVVVPSQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1461 526 CDD PRTases_typeI 371 488 IPR000836 -
Lele26g1461 526 Pfam Uracil phosphoribosyltransferase 312 515 - -
Lele26g1461 526 Pfam Phosphoribulokinase / Uridine kinase family 96 282 IPR006083 GO:0005524|GO:0016301
Lele26g1461 526 PANTHER URIDINE KINASE 89 425 - -
Lele26g1461 526 Coils Coil 524 526 - -
Lele26g1461 526 Gene3D - 91 297 IPR027417 -
Lele26g1461 526 PRINTS Uridine kinase signature 169 184 - -
Lele26g1461 526 PRINTS Uridine kinase signature 226 236 - -
Lele26g1461 526 PRINTS Uridine kinase signature 262 275 - -
Lele26g1461 526 PRINTS Uridine kinase signature 94 111 - -
Lele26g1461 526 PRINTS Uridine kinase signature 240 251 - -
Lele26g1461 526 PRINTS Uridine kinase signature 124 135 - -
Lele26g1461 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 287 IPR027417 -
Lele26g1461 526 SUPERFAMILY PRTase-like 297 516 IPR029057 -
Lele26g1461 526 TIGRFAM udk: uridine kinase 94 294 IPR000764 -
Lele26g1461 526 FunFam Uridine kinase 298 515 - -
Lele26g1461 526 FunFam Uridine kinase 91 297 - -
Lele26g1461 526 CDD UMPK 107 294 IPR000764 -
Lele26g1461 526 Gene3D - 298 515 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1461 Lele-ChrLele26 10370562 10379590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1461 47 518 PRT Gene Family AT4G26510 82.030 0.0 798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1461 26 10370562 10379590 Lele01g1275 01 7758477 7761096 CCT
Lele26g1461 26 10370562 10379590 Lele02g1544 02 19487811 19489898 CCT
Lele26g1461 26 10370562 10379590 Lele03g1288 03 7732177 7734688 CCT
Lele26g1461 26 10370562 10379590 Lele04g1532 04 20337990 20339898 CCT
Lele26g1461 26 10370562 10379590 Lele27g0650 27 14436877 14445064 hybridization
Lele26g1461 26 10370562 10379590 Lele28g1446 28 10617288 10619549 hybridization