Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1441 ATGGTGAAGCTTCGCACGCCGAAGAACGAAGATCCCAAGCTCGAGAATTCTGGTGATGTAGTTTACCACCAAAAGCTCTGCGTGTCCATCGACTCAGATTTACAGGCTCTTGAGGGTTATAGTGCGGCTCATGAGCCAAATTATCGGGTTGGTGGTTCATATGATGAAAGAAGGTTTATAGATGAAAGCTACTCAAGGGATAATATATACCAGAGAGGTGCCTTCCACCGTGATGCTTTGGATAGGGAGGCATATCCTCCATCAGGACCAGCTGTTGGCCATTGGAATGAATCCAAACGGAGAGGTTATGATGAAGACTCTTTGCTTGACAAGGAATCTAGACTTCTTCAAAGGCCTTATTATGATTCATATCATCGGATTGATGCTTTCAGAGATAGGGAGGCTGACATGTATCCAGAATTTGAAAAGTTTCGAGATGGCTTTGCCAACATGGAAAACTATGATGATCGAGGATATGATAAACTTGGTAGGTTTGGGGGACACGATCGTGATGACTATGCATATGATGATTATGGCTATAGGTCTCGTGTATCCCATCATTATAGGGAGGATAGCCGTGAGAGGGATATTGATCATGGTCGTCATAGTCATGATTCTGATCATGGGAAAGGTAGAAGAGATAGCAATTGGAGGCGACGTGAATCTCATGACCGGGAACATGATAGAAGATATCCTAGTAGGGGAAGAGATTTGAGTCCACGTAGGAGGCATGAGCGGTCTCGATCCCGTTCTCAGTCCCGGTCTCAATCTCGATCTCGATCCCACTCTCGTTCTCATTCACTCTCTCGATCCCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGTTATCGGGAAGACAACTATGCTGATAGTCGATATGAGAGAAGTGAAAAACAAAGGGATCGTGAAGAGAAGCGGCGTGGGCACTATTCAGTGGCAGAATGGGGGCCACTTCGGCATGTTCGAGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGGACGAGCAATGATGGACAAACTTGGAGACGATGGTCTTGTTGTGGATGGTAGAAGGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGTCATAATCATAAAGGCATTACAGTACCGTCTGATTGGATGTGCACCATATGCGGTTACATCAATTTTGCCCGGCGAACATCCTGCTATCAGTGTAATGAACCACGGAGTGAGGATGCTCCTGCAGCAGATATTACATTGTCAAATCCAACAGCCTTAGGAAAGAAAGGATTAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAAAATGCTGATGATGAAGTGCTTCGCTATGAGTTCTCCAAACATGCTCCTATTAAGGATCTTCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTCTATTCGGTGGAGGATGCCACCAAGGCTCTTGAAGCAACAAATGGAACGACTTTTGAGAAGAATGGACAGATTCTAAGAGTAGCATATGCAAAAAGTATCCTGGGTCCCTGGATCAGGAACATCAGGCTGATGTTGTCAAATGATTTCTCGCATTTTTGTGGCCTTCATCTAGCTGTTAAAGTAAAGCAAGTTATTACCACTAGATATGATTCTGTTGGATGGGCTCCTAAAGAATACAATTCAGATAACAAGCAATCATCTGGTCAACAGCAAACTGGTGCAGCTCAGACAGATGCATTGGCTCCACAAACAGGCTTTGTTTGGGATGAGGCATCTGGTTATTACTACGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTATTATGATGGTAATAAGGGGATTTGGTATTCTTATGATCACAATACTCAGCAATATACCCCTTGCACTGATCAAACTGAGAATAAAGCTCCTAGTAATCAATCTGAACCTTCCAAGGTGTCTGACAGTTCCAGCAGTAAAAAAGTGGTTATTTCTGCCCCTGCTACTACTGTTACATCTGCTGAGAAGCCACCTTCTTTGGCAGATGCAGTCCAGGCTGCTGCAACTGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTCTGGCTAACAAAAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGCGGAGCCATGAGGGTCAAGCTACTCGTGTAGCTCTGGAAGACAATCACCAATCCACATCCATTGATGATAGGTCTTCTGGATATCCCACAAAGAACAAGTTCAAAAATGAGACTACATATACAAGGGAGAATACTGTGTCCTCTTCAGGGATTCCCGCGGCTCGTTCTTCTCAGGCCATTGCTTCTGATTCTCAGGTCCAGCCACGGCCTGTTGGTAATAGTCTTGGAGGCACTCTGATGGGGGTTATAAGAGGCTCTGGAAGAGGGATCATTAAATCCGATAGTTCTTACTCAGGACCTTCAGCTTCAGCCGCTGCATGTGCATCAGGCTCGTCTACATCAAATGTAGATGCTCCAACGGTTGCAACTCCCTTTAGAACAGATGTTTCCGCACTGGGTGCATATGCTACACCTGTCTCTAGTGGAAGTGGCCGAAGACGGTTTTCAGAAATGCCTCATTCTGCTTCAGCCCCCAAGGAACAACCTCAAACTACCTACAGGGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGTTCATCATTGTCAGTTGTGGATGATTTGGCTGATCTGGAATCTGGGGCAAAAAAAATTTGTTTTTACCACATGACCTTTGAAGATCGAGATTTTGCATCGAGGAAGGGTGATCCAATGCCTTTCCCTCCTGGGGTTGGTGGGGGACGTGTGGTTGGAGATGCCAACCTTGATACCTATGAGGTGATTACAGCTGACAAAGCAATTGATGAAAACAATGTAGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGTCTAGGTAAGGATGGAAGTGGAATGACAGAGCCTGTCCAGGCACAAAGCACAGAAAGTAGAGCAGGACTTGGAACTCAGCAGAAAAAGCTGGATCCTAGCCTTGAGGTTCAGGCAGGAGACAGTTACAAGACGCTTATTCACAAGAAAGCACTTGCCAGATTTTGGGAAATGTCATAG 3249 0.4494 MVKLRTPKNEDPKLENSGDVVYHQKLCVSIDSDLQALEGYSAAHEPNYRVGGSYDERRFIDESYSRDNIYQRGAFHRDALDREAYPPSGPAVGHWNESKRRGYDEDSLLDKESRLLQRPYYDSYHRIDAFRDREADMYPEFEKFRDGFANMENYDDRGYDKLGRFGGHDRDDYAYDDYGYRSRVSHHYREDSRERDIDHGRHSHDSDHGKGRRDSNWRRRESHDREHDRRYPSRGRDLSPRRRHERSRSRSQSRSQSRSRSHSRSHSLSRSQSHGYDDRPRSRSPRGRSHGRSYREDNYADSRYERSEKQRDREEKRRGHYSVAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAGRAMMDKLGDDGLVVDGRRLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKGITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGLEAGPTHVLVVRGLDENADDEVLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTFEKNGQILRVAYAKSILGPWIRNIRLMLSNDFSHFCGLHLAVKVKQVITTRYDSVGWAPKEYNSDNKQSSGQQQTGAAQTDALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNKGIWYSYDHNTQQYTPCTDQTENKAPSNQSEPSKVSDSSSSKKVVISAPATTVTSAEKPPSLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNHQSTSIDDRSSGYPTKNKFKNETTYTRENTVSSSGIPAARSSQAIASDSQVQPRPVGNSLGGTLMGVIRGSGRGIIKSDSSYSGPSASAAACASGSSTSNVDAPTVATPFRTDVSALGAYATPVSSGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSVVDDLADLESGAKKICFYHMTFEDRDFASRKGDPMPFPPGVGGGRVVGDANLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVQAQSTESRAGLGTQQKKLDPSLEVQAGDSYKTLIHKKALARFWEMS 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1441 1082 MobiDBLite consensus disorder prediction 894 926 - -
Lele26g1441 1082 MobiDBLite consensus disorder prediction 187 320 - -
Lele26g1441 1082 ProSiteProfiles Zinc finger RanBP2 type profile. 409 438 IPR001876 -
Lele26g1441 1082 MobiDBLite consensus disorder prediction 773 831 - -
Lele26g1441 1082 MobiDBLite consensus disorder prediction 245 267 - -
Lele26g1441 1082 SUPERFAMILY Ran binding protein zinc finger-like 403 439 IPR036443 -
Lele26g1441 1082 MobiDBLite consensus disorder prediction 1033 1053 - -
Lele26g1441 1082 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 532 IPR000504 GO:0003723
Lele26g1441 1082 Gene3D - 454 612 IPR012677 -
Lele26g1441 1082 Gene3D - 322 408 IPR012677 -
Lele26g1441 1082 PANTHER RNA-BINDING PROTEIN 225 1078 - -
Lele26g1441 1082 SMART rrm1_1 309 379 IPR000504 GO:0003723
Lele26g1441 1082 SMART rrm1_1 465 540 IPR000504 GO:0003723
Lele26g1441 1082 CDD RRM1_RRM2_RBM5_like 462 542 - -
Lele26g1441 1082 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 383 IPR000504 GO:0003723
Lele26g1441 1082 Gene3D - 409 439 - -
Lele26g1441 1082 MobiDBLite consensus disorder prediction 779 830 - -
Lele26g1441 1082 SMART zf_4 411 435 IPR001876 -
Lele26g1441 1082 CDD OCRE_SUA_like 613 664 IPR035623 -
Lele26g1441 1082 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 544 IPR000504 GO:0003723
Lele26g1441 1082 SUPERFAMILY RNA-binding domain, RBD 325 432 IPR035979 GO:0003676
Lele26g1441 1082 MobiDBLite consensus disorder prediction 187 244 - -
Lele26g1441 1082 MobiDBLite consensus disorder prediction 852 876 - -
Lele26g1441 1082 Pfam OCRE domain 615 663 IPR041591 -
Lele26g1441 1082 SMART G-patch_5 1004 1050 IPR000467 GO:0003676
Lele26g1441 1082 Pfam G-patch domain 1007 1049 IPR000467 GO:0003676
Lele26g1441 1082 MobiDBLite consensus disorder prediction 1024 1053 - -
Lele26g1441 1082 ProSiteProfiles G-patch domain profile. 1006 1052 IPR000467 GO:0003676
Lele26g1441 1082 SUPERFAMILY RNA-binding domain, RBD 462 544 IPR035979 GO:0003676
Lele26g1441 1082 MobiDBLite consensus disorder prediction 271 320 - -
Lele26g1441 1082 MobiDBLite consensus disorder prediction 662 690 - -
Lele26g1441 1082 ProSitePatterns Zinc finger RanBP2-type signature. 413 432 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1441 Lele-ChrLele26 10115576 10127687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1441 985 1051 C2H2 Transcription Factor Family AT5G26610 41.791 3.41e-09 57.8