LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele26g1384	ATGAGATACTCCTTCACTGCCTTCTTTGCTGATAATCAAACCACTAATATCAATCACTTCTTGAAACCAGGAGATTCAAGCAAGAAGGGGGCCATTATTGGTGGAGTTGTGGGAGGAGTATCTTTTATTTTGATTATTCTTGCATTATTTGCTTTGTATATGCGATCAAAGTCGTCCAAGATGGTTCCTAAAGGTGACATTTTGGGAGCCACTGAGTTGAAAGGTCCAGTTACCTTTAGGTATAAGGATCTAAAGTCAGCGACAAAAAATTTCAGTGAAAAAAATAAACTAGGAGAAGAAGGTTTTGGTGCTGTATACAAGGGTACTCTAAAAAATGGAAAGGTAGTTGCTATCAAGAAATTCGATTTAGGGCAATCCACACAGATGGAGAAAGATTTTGAGAGTGAAGTGAAATTGATAAGTAATGTTCATCATCGAAACATTGTTCGGCTTCTGGGATGTTGCAATAAAGGTCAAGAGAGACTTCTTGTTTATGAGTACATGAAAAACAACGATGTTGGCCAATTCTTATTTGGTGAAAATAAAGATTCTCTCAGTTGGGCGCAACGTTATGGAATAATTATGGGCACTGCAAGAGGTTTAGCATATCTACATGAAGAATTCCATGTTTGTATCATACATAGAGATATAAAAACTAGCAACATTTTCTTGGATGATGATTTCCAACCTAAAATTGCTAATTTTGGACTCGCAAGACTTCTTCCAAGAGATCAATCTCATCTCAATACAAATTTTGCGGGAACAATGGGATATGTAGCACCTGAATATGCAATGCACGGTCAATTATCAGAGAAAGTTGATACTTATAGCTTTGGTGTTGTTGTCCTAGAAATCATAAGTGGACAGAAGAGTAGTGCACTGAGGGCTGATGATAAAGGCGAATACCTCCTTCAAAAAGCTTGGAAACTGTATGAGAGAGACATGCATATTGATTTTGTGGACAAAACCTTAGACCCAAATGAGTATGATGCAGAGGAAGTGAAGAAAATCATAGAGATTGGATTGCTTTGCACTCAATCATCTCCTACAACAAGGCCAAGAATGTCTGAAATTGTGAGAATGCTCAAAAGAAAGAGCTTAATGGAGCACCAACAGCCCACTATGCCTGTCTATGTTGATCCTAGTTCTTGGCCCAAAAAAGACACCTCTATGACTAACAGTTCATCTTCATCAAATGCTATTCTCTCCACTTCCATTCTATCAGGAAGGTGA	1233	0.3796	MRYSFTAFFADNQTTNINHFLKPGDSSKKGAIIGGVVGGVSFILIILALFALYMRSKSSKMVPKGDILGATELKGPVTFRYKDLKSATKNFSEKNKLGEEGFGAVYKGTLKNGKVVAIKKFDLGQSTQMEKDFESEVKLISNVHHRNIVRLLGCCNKGQERLLVYEYMKNNDVGQFLFGENKDSLSWAQRYGIIMGTARGLAYLHEEFHVCIIHRDIKTSNIFLDDDFQPKIANFGLARLLPRDQSHLNTNFAGTMGYVAPEYAMHGQLSEKVDTYSFGVVVLEIISGQKSSALRADDKGEYLLQKAWKLYERDMHIDFVDKTLDPNEYDAEEVKKIIEIGLLCTQSSPTTRPRMSEIVRMLKRKSLMEHQQPTMPVYVDPSSWPKKDTSMTNSSSSSNAILSTSILSGR	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele26g1384	410	ProSiteProfiles	Protein kinase domain profile.	91	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele26g1384	410	SMART	serkin_6	91	343	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele26g1384	410	MobiDBLite	consensus disorder prediction	376	410	-	-
	Lele26g1384	410	Gene3D	Transferase(Phosphotransferase) domain 1	168	379	-	-
	Lele26g1384	410	MobiDBLite	consensus disorder prediction	385	410	-	-
	Lele26g1384	410	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	212	224	IPR008271	GO:0004672\|GO:0006468
	Lele26g1384	410	FunFam	Cysteine-rich receptor-like protein kinase 2	168	370	-	-
	Lele26g1384	410	Gene3D	Phosphorylase Kinase; domain 1	55	167	-	-
	Lele26g1384	410	SUPERFAMILY	Protein kinase-like (PK-like)	73	362	IPR011009	-
	Lele26g1384	410	FunFam	Cysteine-rich receptor-like protein kinase 2	56	167	-	-
	Lele26g1384	410	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	26	395	-	-
	Lele26g1384	410	Pfam	Protein tyrosine and serine/threonine kinase	94	362	IPR001245	GO:0004672\|GO:0006468
	Lele26g1384	410	CDD	STKc_IRAK	97	364	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele26g1384	Lele-ChrLele26	9713318	9715481	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele26g1384	27	408	Receptor kinase-like Gene Family	AT1G56120	44.241	1.83e-102	322

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lele26g1384		PK_Tyr_Ser-Thr	2e-47	CL0016