Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1367 ATGGAGAGTTCTCGCAATGGAAAGGGAAGAACGAACTTGGTAGATATTGTGTTCTCTTGGACTTTTACCGATGCTCTCAACCAAAATCTCTATAAAGACCAGGTTCGAAACATTCCTTTAACATTCTTATCAGCAACAGAATACATGAAATCCTTTATTCCTTCACTGATTGAGGAAACACACAGTGATCTATGTTCAAGCTTGAAGGGCATTTCCCAAGCTCCTACTTTTGAAATCCTGACATATAAGAGAATGGGTAAGGGCTTGCTCTATCAATTGACATTTGATGAGATTCATGTTGGAGACTATGAACCTCAATCTGGAGATCTCATTGCCATCACTGAGAGTAAGCCAAAAAGCCTTCAAGACTTGAACATTCCCCCAAGATTTTATCATATTGCTTATGTTCAAGGGTCAAAAATGGGTCAGATGACAGTACTTTCATCAAAGAACATGGAGATTGAACAAGATATGAGGAGCATGAAGGCACAAAAGCTTTATGCTTCGTATCTTATAAACTTGACAACCAATATTCGTATTTGGAAGGCCTTGAACTCGCAGTTGGAGGGTGCAAGCTTCAATATTATTGGAAAAGTTCTGCAATCCGATAAATTGATTGGAAAGAGCAGTCACATTTGTCCTTCAGAAGAACACCATAATACAGACATTTCTATTACAACAAACATTATCAGATCTCAGAATCTGAATGAAAGCCAGAAAGATGCTGTATTAAGTAGTGTTGCAATGAGGAAATGTCATCATAACCACACTGTCAAACTTATTTGGGGCCCACCTGGGACTGGCAAAACAAAGACAGTTGCATCCATCCTATTTTCACTGCTCAAACTAAAAACCAGAACATTAACATGTGCTCCAACCAATACTGCTGTGTTGAAAGTGACAGCCCGCCTGCGCGGTTTAGTCAAAGATCAGCTTCAGCTTGATGGCTATGGTTTGGGCGACATAGTGCTTTTCGGGAATAATTCTCGAATGAAAGTTGATGATTACTGGGGCCTTCCCGATATCTTTCTTGATTATCGCGTTGAAATGCTTGAGCAGTGTCTTTCTCCACTGACTGGATGGAAACATAACTTGGAATCAATGATCAGTTTGCTTGAGAAACCTCATGAGCAGTATCTTTTATCTAAGATTGATCCAAAGTATGAGGAGGTTAATGATCTAATTCCATTAGAAGAATTTACTAAGCTTAATTACAGCAGTGTAGAGAAAGCATATCTCTCTTACAAGCAACTTGAAGATAAAGATGATCACATGACATTGGAGCAATTTGTGAAGAAGAGATACAGTTACATTAATGACCAATACCTTTCTTATAATGCTGAAGTTCAGTTTATAAAGAGGAGGTTCAGCTTCATTGGTTTAAATCTCAAGTCCAGCTTGCAAACATTATACTCACAATTACCAACTTCCCTTGTTCCATTGGAGGTGGCGAACAACATATGTGTAGCTCTTGATTTGCTTGAAGCCCTTAGAAATTCTTTGAACCGAAACGAGTTCATAGAAATTCCCAGAGGAAATCTAGAAGGAAAAAGTAATGTCATTCAACCAGAAATTCCAAATATGAAAGAGAATAAATGGTGTTTATTTGACATCTTCACTTGGATAATTCAAAGACTTCTTAAGCCCATCATGCCTTGGCTCATTATGCCTGTGGAAACACATATTCCAATAAAAGATGTTACATTTTCCTTTGGAAGGTTAAGAATGAAAAGAGATGAGTGCCTTAGCATACTTAGATCACTTTCTCAGTCAATTTCACTTCCTCAAATTGAAAGACGCTTTGAAATAATGGATATTTGCTTGAAGAAGGCATGCCTGATTTTTTGTACTGCATCAGGTTCTTCCAAATTGTTCCATGAAGGAATGAGTCCCATACCCTTTGTAGTTATAGATGAGGCAGCTCAGCTCAAAGAGTGTGAGTCAACCATACCTCTGCAACTTCCAGGGGTAAGACATGCTGTTCTCATAGGTGATGAGAGGCAACTTCCTGCAATGGTTAAGAGCAAGATTTCTGATGAAGCTGGATTTGGAAGAAGCATTTTTGAGAGGCTTGTCTTGCTGGGATTCATGAAGCATATGCTTCAAGTCCAATTTAGAATGCATCCATCCATAAGTTTATTCCCCAATAGGGAATTCTATGAAGGGCAACTAGTGGATGGCATGAATGTAAGATATTCAAGCTATAGTAAATGTTTCCTTGAAGGAAAAAATTACGGCTCCTATTCTTTTATAAACATAGCTCAGGGAAAAGAGCAATTTGGTCATGGACACAGCTTGATGAACATGGTGGAAGTTGCTGCTATCTCTGAGATTATAAAAGGCCTGCACAAAGAGTTCCTGAGCAAGAGAAGGAAACTCAGCATAGGAGTGATATCACCATATAAGGCTCAGGTCCATGAAATCCAACAGAAAGTTAATCAGTACATGGTTTCAGATGGTGACTTCTCTGTGACCGTTCGTTCTGTTGATGGATTTCAAGGTGGTGAAGAAGATATCATAATGATCTCCACTGTCAGATCTAATAAGAGTGGAAATGTGGGGTTTCTCTCTAATAGACAAAGAGCAAATGTCGCTCTTACTCGTGCTAGACATTGTCTGTGGATATTGGGGAATGCAGAAACTCTAGAGCAGAGTAGCTCAGTATGGAGAAAGCTAGTGAATGATGCTAAGCGAAGAAAGTGCTTCCATAATGCTGATGATGACCAGAACTTGGCTCAGGCTATTAAGGATGCCTCGCTTATGCTTGAACTAGCTGATGAATCAAAGTCACAATTTAACTCACCAATTATAATGGACAAGGCAAAGGAGTCAGAAACAGTACAATATGAAGCAGAGCAGCATAGTTTGAAGACTGGAGGCTGTTGCGCCTGCAATGTGGTCGAAGCTGTCAAGACTCAAGAGTAG 2925 0.3932 MESSRNGKGRTNLVDIVFSWTFTDALNQNLYKDQVRNIPLTFLSATEYMKSFIPSLIEETHSDLCSSLKGISQAPTFEILTYKRMGKGLLYQLTFDEIHVGDYEPQSGDLIAITESKPKSLQDLNIPPRFYHIAYVQGSKMGQMTVLSSKNMEIEQDMRSMKAQKLYASYLINLTTNIRIWKALNSQLEGASFNIIGKVLQSDKLIGKSSHICPSEEHHNTDISITTNIIRSQNLNESQKDAVLSSVAMRKCHHNHTVKLIWGPPGTGKTKTVASILFSLLKLKTRTLTCAPTNTAVLKVTARLRGLVKDQLQLDGYGLGDIVLFGNNSRMKVDDYWGLPDIFLDYRVEMLEQCLSPLTGWKHNLESMISLLEKPHEQYLLSKIDPKYEEVNDLIPLEEFTKLNYSSVEKAYLSYKQLEDKDDHMTLEQFVKKRYSYINDQYLSYNAEVQFIKRRFSFIGLNLKSSLQTLYSQLPTSLVPLEVANNICVALDLLEALRNSLNRNEFIEIPRGNLEGKSNVIQPEIPNMKENKWCLFDIFTWIIQRLLKPIMPWLIMPVETHIPIKDVTFSFGRLRMKRDECLSILRSLSQSISLPQIERRFEIMDICLKKACLIFCTASGSSKLFHEGMSPIPFVVIDEAAQLKECESTIPLQLPGVRHAVLIGDERQLPAMVKSKISDEAGFGRSIFERLVLLGFMKHMLQVQFRMHPSISLFPNREFYEGQLVDGMNVRYSSYSKCFLEGKNYGSYSFINIAQGKEQFGHGHSLMNMVEVAAISEIIKGLHKEFLSKRRKLSIGVISPYKAQVHEIQQKVNQYMVSDGDFSVTVRSVDGFQGGEEDIIMISTVRSNKSGNVGFLSNRQRANVALTRARHCLWILGNAETLEQSSSVWRKLVNDAKRRKCFHNADDDQNLAQAIKDASLMLELADESKSQFNSPIIMDKAKESETVQYEAEQHSLKTGGCCACNVVEAVKTQE 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1367 974 CDD SF1_C_Upf1 707 897 IPR041679 -
Lele26g1367 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 912 IPR027417 -
Lele26g1367 974 Pfam AAA domain 684 879 IPR041679 -
Lele26g1367 974 Gene3D - 565 704 IPR027417 -
Lele26g1367 974 FunFam P-loop containing nucleoside triphosphate hydrolase 705 912 - -
Lele26g1367 974 Pfam AAA domain 234 313 IPR041677 GO:0004386
Lele26g1367 974 Pfam AAA domain 586 676 IPR041677 GO:0004386
Lele26g1367 974 PANTHER DNA2/NAM7 HELICASE FAMILY 33 945 IPR045055 -
Lele26g1367 974 Pfam Domain of unknown function (DUF6469) 103 186 IPR045529 -
Lele26g1367 974 Gene3D - 145 489 IPR027417 -
Lele26g1367 974 Gene3D - 706 917 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1367 Lele-ChrLele26 9332148 9338237 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1367 26 9332148 9338237 Lele01g1072 01 6265419 6268350 CCT
Lele26g1367 26 9332148 9338237 Lele02g1098 02 6945959 6948547 CCT
Lele26g1367 26 9332148 9338237 Lele03g1077 03 6258789 6263863 CCT
Lele26g1367 26 9332148 9338237 Lele04g1086 04 6811529 6814602 CCT
Lele26g1367 26 9332148 9338237 Lele27g0722 27 15375684 15380462 hybridization
Lele26g1367 26 9332148 9338237 Lele28g1353 28 9368017 9384497 hybridization