Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1357 ATGCAGAGTTGTGTCAGTAGTCCAGCTGGAATCTTACGAAGAAAGAAAAACCTTGGCCTTCTGGAGGATACTGCTGAATATACAAAGGTACACAGCAGCGTATGCGCAAGTCCTACTTTGTCACTTTCAGAGAGGTGCTTTTCTGATGGCTTATCATATGCTTGTGATAGCTTTTATTCATTGGAGTCTTTCCCGTCTGATACGCAAAGGGCAGTTGATAATTCAGTTCCAAATTCTCCATACATCAATCCGGATATTCTTAGCAAGAGTAAATCAACATATGTTGATTCAGAATATCAGAAGGATTTGCCCTATAGGTATCTTGTGCCTTCTACCTCTCTACGTGTAGCAAATAACAGCATATTGAAAGATGTCATGATCTGGGGTGGGGGGATTGTCGGAATTGTAGGGAGCGGGGACGATCAGCTCGTTGACCAATGGGGAGCTCACGTGCTATTGCCAAAGTTACTAGAATCCACCATGATGTTAGATGTAGAAAACATAGCATTAGGAGAAAAACATGCTGCACTTGTTACACAACAAGGCGAAGTGTTAAGCTGGGGTGAGGGGAAAGGAGGAAGGCTTGGGCTCAAAATAGATATAGATATAAGTTCACCCAAAATTGTTGATTCTCTTAATGGGGTCCATGTAAAGGATGTTGCCTGCGGTGAGTATCATACGTGTGCTTTAACGAATTCTGGCGAAGTATATGCATGGGGGAATGATGGTTGTGTTGCAGATCAGTTTGGTGAAGGGAGATTCAAAACTCAATGGATACCACAGAAACTCTCCGGTCCTTTAGATGGCATTATTATATCACATGTCACTTGTGGGGAATGGCATACAGCAATTGTCTCGTCTTGTGGAAGGCTATTTACATATGGGGATGGTACATTTGGAGCTCTTGGGCATGGGAATTCTCAGAGCATTTGTCAACCAAAAGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCTGTTGCTTGTGGATCATGGCACACGGCAGCGATTGTTGAAGTCATGGTTGACCGGTTTAGGTATAATACCGGTAAGCTGTTCACTTGGGGCGATGGAGAGAAAGGGATGCTTGGCCATGCCGATAATGGGAGGAAGCTTTTGCCAACCTGTGTTTCACAACTTCTGGATTATGACTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTGGCACTTAATAATATGGGCAAAGTTTTCACAATGGGAAGTGCAGTGCATGGACAGCTAGGAAATCCGCATGACAAGGATAAATTGGTGACAATCGTTGAAGGACTGCTTAAACAGGAGTTTGTGAAAGAGATATCATCAGGTTCATATCATGTTGCTGTCTTGACATCTTCCAGCAGTGTCTATACATGGGGAAAGGGTGCAAATGGACAGCTAGGGTTAGGTGACACCGAAGACAGATACTCGCCGTCTTTTGTTGTGGCTCTAAGAGACTGGCAGGTAGAGAGTATTGCTTGTGGACCAAGCAGCACGGCTGCTATCTGTTTACACAAACCAATTTCTATTGGTGACCAGTCAACTTGTAGTGGTTGTAAATTGCCTTTTGGATTTACAAGGAAGAAGCATAATTGCTATAATTGTGGCCTCTTATTTTGTCATCCATGTAGTTGTAAAAAGGTTACTAATGCAGCTCTAGCACCGAATAAGAACAAGGCTTTTCGGGTTTGTGACCAATGCTTCAATAAACAGCTTGGAAGTACACCTTCAGTTGTGGCATCAAGGTCCAGAAATTACAACTCTCAGAAGCTGCTGAAGAATCAGAACAAGTTTACCGATTTTACAGAAGATAGAGGAGAAACAACAGTGACACAGGGTCCACTGTTGTCTCTCGGTCAATCATGCTACAAAAGAAGCATGCCGGGTGGAAGAAGGGACTGGAAAAACCAACAAGAAAGCCAGCATGATTTAGAAAATATTTCTTCTTTATCTGGTGGAGTGCCGAAATGGGGGCAAGTTTCATGCCCTGCCCGGTTTGAAAACTGTACAGAAAAGTCTGTTTCATCATTTAGAAATAAATTAGGTTCTCTTAGTTCTGTGAATTTAGAGTCCACTTTATCCAACAATTTGTATGGAGAGAAAGATACCACAAAGTCTGATAATACATTGATAGAAGAAGTTCAGAGGCTGAGAGCTGAGGTTAGAATCCTTGAAGAGCAATGCGAGATAGGAAACCGTAAGTTACAAGAATATCATAAAAAGATTGAGGAGACTTGGCTCCTGGCAAAGGAGGAGGCTGCAAAGAGCAAGGCAGCAAAAGAGGTCATAAGAACATTGGAATGTCTCTCGAATTTAACACCCATTTGTACAGATATCAATTCTCCGAGGGATGGCAATGCGGACAGTCTATCGAATTCCCCTATGGTGTTCTCTGACTCAGTAAAATCCAGACTCGCAAGAAGCTCAATCCTTAAAAGTGATAGATCAAAGGAGGATTCTCAGTTAACTAAAGCAGAATCTCATGAAGATAGCTCTAAGGGCTTGAAGGTTGAATGGGTAGAACAATATGAGCCTGGTGTCTACATCACTTTAACCGCCTTGCCGTGTCGGCAGAAGGGCCTTAAGAGAGTTAGATTCAGCCGGAAACAATTTTCCGAGAATGAAGCCGAGAGATGGTGGGACAAGAATCAAGGCACAGTGTATCAGAAGTATGGGATTGAAGGATATATAAAGACAAGACAAAACCGAGAGAAGGGCTAA 2721 0.427 MQSCVSSPAGILRRKKNLGLLEDTAEYTKVHSSVCASPTLSLSERCFSDGLSYACDSFYSLESFPSDTQRAVDNSVPNSPYINPDILSKSKSTYVDSEYQKDLPYRYLVPSTSLRVANNSILKDVMIWGGGIVGIVGSGDDQLVDQWGAHVLLPKLLESTMMLDVENIALGEKHAALVTQQGEVLSWGEGKGGRLGLKIDIDISSPKIVDSLNGVHVKDVACGEYHTCALTNSGEVYAWGNDGCVADQFGEGRFKTQWIPQKLSGPLDGIIISHVTCGEWHTAIVSSCGRLFTYGDGTFGALGHGNSQSICQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGEKGMLGHADNGRKLLPTCVSQLLDYDFVQVSCGRMLTVALNNMGKVFTMGSAVHGQLGNPHDKDKLVTIVEGLLKQEFVKEISSGSYHVAVLTSSSSVYTWGKGANGQLGLGDTEDRYSPSFVVALRDWQVESIACGPSSTAAICLHKPISIGDQSTCSGCKLPFGFTRKKHNCYNCGLLFCHPCSCKKVTNAALAPNKNKAFRVCDQCFNKQLGSTPSVVASRSRNYNSQKLLKNQNKFTDFTEDRGETTVTQGPLLSLGQSCYKRSMPGGRRDWKNQQESQHDLENISSLSGGVPKWGQVSCPARFENCTEKSVSSFRNKLGSLSSVNLESTLSNNLYGEKDTTKSDNTLIEEVQRLRAEVRILEEQCEIGNRKLQEYHKKIEETWLLAKEEAAKSKAAKEVIRTLECLSNLTPICTDINSPRDGNADSLSNSPMVFSDSVKSRLARSSILKSDRSKEDSQLTKAESHEDSSKGLKVEWVEQYEPGVYITLTALPCRQKGLKRVRFSRKQFSENEAERWWDKNQGTVYQKYGIEGYIKTRQNREKG 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1357 906 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 289 340 IPR000408 -
Lele26g1357 906 SMART fyve_4 504 573 IPR000306 GO:0046872
Lele26g1357 906 Pfam Regulator of chromosome condensation (RCC1) repeat 217 244 - -
Lele26g1357 906 PRINTS Chromosome condensation regulator RCC1 signature 184 200 IPR000408 -
Lele26g1357 906 PRINTS Chromosome condensation regulator RCC1 signature 449 470 IPR000408 -
Lele26g1357 906 PRINTS Chromosome condensation regulator RCC1 signature 391 409 IPR000408 -
Lele26g1357 906 PRINTS Chromosome condensation regulator RCC1 signature 275 291 IPR000408 -
Lele26g1357 906 PRINTS Chromosome condensation regulator RCC1 signature 291 305 IPR000408 -
Lele26g1357 906 PRINTS Chromosome condensation regulator RCC1 signature 124 140 IPR000408 -
Lele26g1357 906 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Lele26g1357 906 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 234 288 IPR000408 -
Lele26g1357 906 Pfam Transcription factor regulating root and shoot growth via Pin3 837 891 IPR013591 -
Lele26g1357 906 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 510 572 IPR017455 -
Lele26g1357 906 Gene3D - 345 512 IPR009091 -
Lele26g1357 906 Gene3D - 111 245 IPR009091 -
Lele26g1357 906 Gene3D - 246 342 IPR009091 -
Lele26g1357 906 Pfam FYVE zinc finger 513 570 IPR000306 GO:0046872
Lele26g1357 906 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 233 IPR000408 -
Lele26g1357 906 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Lele26g1357 906 Coils Coil 707 734 - -
Lele26g1357 906 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 123 181 IPR000408 -
Lele26g1357 906 SUPERFAMILY RCC1/BLIP-II 124 506 IPR009091 -
Lele26g1357 906 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 578 IPR013083 -
Lele26g1357 906 ProSiteProfiles BRX domain profile. 837 892 IPR013591 -
Lele26g1357 906 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 327 337 IPR000408 -
Lele26g1357 906 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 401 IPR000408 -
Lele26g1357 906 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 96 771 - -
Lele26g1357 906 SUPERFAMILY FYVE/PHD zinc finger 511 578 IPR011011 -
Lele26g1357 906 Pfam Regulator of chromosome condensation (RCC1) repeat 350 398 IPR000408 -
Lele26g1357 906 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Lele26g1357 906 Pfam Regulator of chromosome condensation (RCC1) repeat 289 337 IPR000408 -
Lele26g1357 906 Pfam Regulator of chromosome condensation (RCC1) repeat 455 502 IPR000408 -
Lele26g1357 906 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1357 Lele-ChrLele26 9247587 9252950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1357 808 896 Major Intrinsic Protein MIP AT1G31880 35.955 7.40e-11 63.2