Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1352 ATGGAGTTTTGGCGTTCTTGTGACAAGATGCTTTTGATTTGTGTGGATGAAGCCATGGGATGGGATCAAAATGGAGTTACCAGATCTCACGGCAGTATTCCCGTAGGAAATGGAGTATCTTTGAGCTCTGGACTACATTCTGTTGCACGGGTTCATCTAAATGATCAGTTTTCTTGTGGGAATGATTATGCTCCAAAGGTAAGGAAACCGTATACTATCACAAAACAAAGAGAGAGATGGACAGATGAAGAGCACAAGAAGTTTCTTGAAGCCTTAAAGCTGCACGGCCGGGCATGGCGAAAGATTGAAGAACATGTTGGCACAAAGACTACCGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGATCCTGGTGGGAACAATACAAACTCAACGGAGTCCCTTGAAATTCCACCCCCACGTCCAAAACGAAAGCCTATGCATCCTTACCCTCGTAAGCTGGTGGAGCTCCCGAACAAAGAGGCTTCCATACCAAAACAGCTAATGATGTCTAATTCTCTGAAATCATCAGATTTTGACCAAGAAAACCAATCTCCCAAGTCAGTGTTATCTGCAGTTGGTTCAGACACCCTTGGTTCCTCTGATTCAGACACACCAAATGGAAGCTCATCCCCAATTTCATCCAATAGTTCTGTTCATATCAACAACTTTGTAGTTGCTGAACCTGGAAACCTACAATTGGAGGCGGACGTGTGTCCACCATTGGCTGGACTAAATGCTGATCCAACTCTTCTTGATGAGCAACCACTTATGAAGCATGAACTTCTCCAGAAAGAAAGCATATCAACGAAAGATGCTGCTGCAGACGAATCATCTGCTCGGATTCTGAAGCTTTTTGGGACGACTTTGTTGGTAACAGATAACTGCGGGGCATCCTCTCCAACAATGGAAGCATGCAAGTTGATTCACTCAAAAGTTGTTCCATGTTTGAGTATTCCCCACATAAGACCACTGCACGAGAAGGTGCCTGAAGGAAAACAACAACTAGATTCCAATGTAATGGAAATTGAACATGTAGGAGTTAAAAATGAAGGATCTTTGACTAATCCAAGCACTAGCTCTTGTGTAAATAAGGATGAAAGTTCGGATATGGAAGCCAAAAGAGAAACTAAAGCTATATTTGATCTGAAGAAGTGTGGGAAAGGTTTTCGTAATGATTTGACTCTCACTTCGCGTCATCTTGCGCTGAGTTTGGATTTTTTTTGTGAAACATACCGATACTATGACCTTCCTTTTTGCTCACCAGTTGAAGTGGAGGAAAAGAAAGAAACACTCGGTGAAGTTTTGAGTGAAGATCGACTAGTTGCTGCTCCGTATAAAATCAACTTCTTAATTGATAGAGAACATGAGATTATCTGCACAAAGAGGCTCAAAAGAGAAGCGGTTGCCAAATTCAGAACTGCTGTTTTGAAGGATTATTTTTTCCAAATTTTTCCTTTCCTTTACAATGAGGATCGCATCATTGATATTGTCGTTCAAAATGATCCAAATACACTGGTGGACTTGACGGAGGATAAAGAAATAGATATAGACTTCTCATATTCCGTCATATGGATTGAAACTGACACTCCATTTGAGAAGCGGTTGGAGAAATACTCACAGACATCCTTACTGCAACATCACTTGGAAATACATTCGTTTTCAATCATTGGTTTATGTTTTTATCTTATCTTCTCGACTGGGATTCATGTTACAATTCTCATGCGTATACTCAAGAATAATTTCGTGAAGTCCACTGATAATGGTGAACAAGACTACAGTGGGTGGAAAAATGTGTTCAGTGCAATCATCGTCTTCATGCATGCACTATTCGGCAAGGGTGCTCTGTTCAGTGCACTTATTACCGTATACGTGGTAACGTCTGGGATTGCAGGCTACTCTGCTGTTTCCTTCTATTATATGATTGAAGGGAAGAACTGGGTACATTTCTGCTCTTTAGACAACATGTTATTGGTTATCCAACCTTAA 2004 0.4102 MEFWRSCDKMLLICVDEAMGWDQNGVTRSHGSIPVGNGVSLSSGLHSVARVHLNDQFSCGNDYAPKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRKIEEHVGTKTTVQIRSHAQKFFSKVLRDPGGNNTNSTESLEIPPPRPKRKPMHPYPRKLVELPNKEASIPKQLMMSNSLKSSDFDQENQSPKSVLSAVGSDTLGSSDSDTPNGSSSPISSNSSVHINNFVVAEPGNLQLEADVCPPLAGLNADPTLLDEQPLMKHELLQKESISTKDAAADESSARILKLFGTTLLVTDNCGASSPTMEACKLIHSKVVPCLSIPHIRPLHEKVPEGKQQLDSNVMEIEHVGVKNEGSLTNPSTSSCVNKDESSDMEAKRETKAIFDLKKCGKGFRNDLTLTSRHLALSLDFFCETYRYYDLPFCSPVEVEEKKETLGEVLSEDRLVAAPYKINFLIDREHEIICTKRLKREAVAKFRTAVLKDYFFQIFPFLYNEDRIIDIVVQNDPNTLVDLTEDKEIDIDFSYSVIWIETDTPFEKRLEKYSQTSLLQHHLEIHSFSIIGLCFYLIFSTGIHVTILMRILKNNFVKSTDNGEQDYSGWKNVFSAIIVFMHALFGKGALFSALITVYVVTSGIAGYSAVSFYYMIEGKNWVHFCSLDNMLLVIQP 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1352 667 Pfam Endomembrane protein 70 416 489 IPR004240 GO:0016020
Lele26g1352 667 Pfam Endomembrane protein 70 515 606 IPR004240 GO:0016020
Lele26g1352 667 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Lele26g1352 667 SMART sant 76 124 IPR001005 -
Lele26g1352 667 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Lele26g1352 667 MobiDBLite consensus disorder prediction 170 222 - -
Lele26g1352 667 CDD SANT 79 122 IPR001005 -
Lele26g1352 667 Gene3D - 79 125 - -
Lele26g1352 667 FunFam protein REVEILLE 6 isoform X1 79 127 - -
Lele26g1352 667 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Lele26g1352 667 MobiDBLite consensus disorder prediction 124 222 - -
Lele26g1352 667 PANTHER SWI/SNF COMPLEX-RELATED 60 362 - -
Lele26g1352 667 MobiDBLite consensus disorder prediction 143 160 - -
Lele26g1352 667 ProSiteProfiles SANT domain profile. 75 126 IPR017884 -
Lele26g1352 667 SUPERFAMILY Homeodomain-like 71 124 IPR009057 -
Lele26g1352 667 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 75 124 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1352 Lele-ChrLele26 9204501 9212199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1352 415 653 Miscellaneous Gene Families AT5G37310 46.753 1.63e-79 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele26g1352 EMP70 2.3e-15 No_clan