Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1336 ATGGTTTTGTCAGGGACGCTAAGGAAAGTTTTCGGACGTGTCCACAAGGAGAAAATCCTTTCCGGCGGAGAACTCGACTTGGAACCCGTGATTCCGACGCATTTCCAGTGCCCTGTGAGCCTTGAACTGATGAAAGACCCGGTGACGCTGTGCACCGGAATCACCTATGACAGGGACAGCACCGAGAGGTGGATTGAATCTGGGAACAACACTTGCCCCGTGACCAAGCAGGTTCTTTCGAGCACTCACATGATCCCAAATCACGCCATTCGGAGAATGATACAGGACTGGTGCGTGGAGAACCAGTCTTACGGGATCGAAAGAATTCCCACTCCGAGGATCCCCGTCGCGCCGTACGAGGTCTCGGAGACTTGTTCGAGGATAAATGTCGCCACTCGTAATGGGGATGCCAAAAAGTGTCAAGAATTGGCGGGGAAGATTAAGAATTGGGGTAAAGAGAGCGAGAGGAACAAGAGGTGTATAGTGGAGAATGGTGCTTGTGCAGTGTTAGCCTCTGCCTTTGATTCTTTCTCACGTGGGACCATCGAGGAACACAAGGGGGTTCTAGAGGAGATCTTGGGGGTGCTCCCATGGATGATGAATCCATCTCAAGAAGATGCAAGATCGAAATTGAGGTCTGAGGCATCTTTGAATTGCTTGGTTTGGTTTCTGAATGGGAACGACCTTTCAGCAAGGCAAAATGCAGCCATGGTGCTCAAGGAAATGCCTGTGAGAGCTCTAGCTAAAACTGAAGGCTTAATTGAAGCTTTGGTGAAGATGATTAAAGAGCCTACTGGACCTAATGCAACCAAAGCAAGCTTCACCAAGATTTTCCAGTTGGTTTCCTCATCAAATGACAAAGAGAGAATCTCACTGAGATTTGTGGAACTGGGTCTGGTTTCTTTGTTGCTGGAGGCCATTGTTGATGCAGAGAAAAACATATGTGAGAAGGCTTTGGGTGTGTTGGATTGTATCTGTGATTGTAAAGAAGGAAAGGAAGAGGCCATGGCGAATGCTCTAACCTTGCCTCTTGCAATTAAGAAGATCCTAAGGGTATCAGCGTTGGCAACTGAGTTTTCAGTTTCCATTCTCTGGAAGCTCTGTGACAAGGAAGATGAAGAGGTTCTAGTTGAAACAGTTCAACTTGGAGCTTTTCAGAAGCTCCTGGTATTGTTGCAGGTGGGTTGTGAAGAAAGCATGAAGGAGAAGGTCACTGAATTGTTGAAACTGTTGAATGCTTATAGGAGCAGAGCCGAATGTGTTGATTCATCCTTAGATTTCAAGTACCTCAAGAAGCCCTTCTAA 1305 0.4705 MVLSGTLRKVFGRVHKEKILSGGELDLEPVIPTHFQCPVSLELMKDPVTLCTGITYDRDSTERWIESGNNTCPVTKQVLSSTHMIPNHAIRRMIQDWCVENQSYGIERIPTPRIPVAPYEVSETCSRINVATRNGDAKKCQELAGKIKNWGKESERNKRCIVENGACAVLASAFDSFSRGTIEEHKGVLEEILGVLPWMMNPSQEDARSKLRSEASLNCLVWFLNGNDLSARQNAAMVLKEMPVRALAKTEGLIEALVKMIKEPTGPNATKASFTKIFQLVSSSNDKERISLRFVELGLVSLLLEAIVDAEKNICEKALGVLDCICDCKEGKEEAMANALTLPLAIKKILRVSALATEFSVSILWKLCDKEDEEVLVETVQLGAFQKLLVLLQVGCEESMKEKVTELLKLLNAYRSRAECVDSSLDFKYLKKPF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1336 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 104 IPR013083 -
Lele26g1336 434 CDD RING-Ubox_PUB 35 77 IPR045210 -
Lele26g1336 434 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Lele26g1336 434 SUPERFAMILY RING/U-box 26 107 - -
Lele26g1336 434 FunFam RING-type E3 ubiquitin transferase 31 102 - -
Lele26g1336 434 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Lele26g1336 434 SUPERFAMILY ARM repeat 136 409 IPR016024 -
Lele26g1336 434 PANTHER WDSAM1 PROTEIN 28 421 IPR045185 GO:0061630
Lele26g1336 434 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Lele26g1336 434 Gene3D - 127 245 IPR011989 -
Lele26g1336 434 Gene3D - 246 424 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1336 Lele-ChrLele26 9019428 9020732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1336 28 434 U-box Gene Family AT5G37490 48.792 4.04e-124 365