Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1334 ATGACCAGGAGGAAGGTGAAGCTCGCGTTCATTGACAATGAATCTGTGAGGAAGACGACATTCAGGAAGAGGAAGAATGGCATGGTGAAGAAGGCAACTGAACTTTCCACCCTTTGTGGGGTTGAAGCATGCATGATAATTTACAGTCCTTATGATTCTGAGCCTGAGATTTGGCCTTCCTCCATGGGAGTCCAAGGCACAATTGTGAGGTTCAGACAGCTGCCGGAGATGGAGCAGGTCAAGAAGATGATGAACCAGATGAGCTTCATGAGGGAACGGATCCAGAAAATCAGCGAGCAGGTGATGAAGATGAGGAAGATCAATAGGGAGAAGGAGCTGACCCTGATCATGTATCACTACATGAGCACTGGGAATTTTCTGCAGAATATGACTGTCAATGATCTCCATGATATGTCATGGCTGATTGAGCATAACCTGAGGGATATCTGCAGGAGGATGGGGGCACTGCAGATTGAGCCTCAGAATGAAGTCCAAATCCAAGGTCAGGGAGAAAAACAAGCAGGAGAAGGAGAAGATGATCATAACAATGGCAAGGAAGTTATGGAGATGAACATAAGCACATTGCAGAGGCAGCAAAATTTTATGGAACTGATGAATACTGCTGGGGATGAGACACTTCCACCGTTTGGAGATGCCAATCTCTATAATGCTTGGCCTAGCCCCTATTACTTCCCAAAAGCATCCTCCAGCGGCAATTTCTAA 723 0.462 MTRRKVKLAFIDNESVRKTTFRKRKNGMVKKATELSTLCGVEACMIIYSPYDSEPEIWPSSMGVQGTIVRFRQLPEMEQVKKMMNQMSFMRERIQKISEQVMKMRKINREKELTLIMYHYMSTGNFLQNMTVNDLHDMSWLIEHNLRDICRRMGALQIEPQNEVQIQGQGEKQAGEGEDDHNNGKEVMEMNISTLQRQQNFMELMNTAGDETLPPFGDANLYNAWPSPYYFPKASSSGNF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1334 240 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lele26g1334 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lele26g1334 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele26g1334 240 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele26g1334 240 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lele26g1334 240 Coils Coil 80 100 - -
Lele26g1334 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele26g1334 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele26g1334 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele26g1334 240 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lele26g1334 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Lele26g1334 240 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lele26g1334 240 MobiDBLite consensus disorder prediction 161 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1334 Lele-ChrLele26 9015174 9015896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1334 1 157 Type I MADS-box Gene Family AT5G48670 49.682 4.18e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele26g1334 SRF-TF 1.4e-18 No_clan