Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1327 ATGGTTGTTTCGGGTCTTCCAAGAATTAAACAAGAATCATTAACTTCTATTTCGTATGTCTCGTTTCTTCATCTTCTCTTGCTTCTTACTTCAACCGATGTCGTAGATGGTAATTTGGGTCCATTTTATCCTCCACCGTTCGTTAAGCCCACAGTGATAATTGGACGGGAATTGTACAATTTGAGAGCAGATTTTGGGTTCCGGAGAAGGAAAGCAATGAGGAAGCTGAAGTTTCATGAGAAGAAGCTATTGAAGAAAGTAAATTTCTTAGAGTGGAAGAGAGAAGGAGGTCACAGAGAAAATCATGTTATGCAACGCTATCATATTACTGGACGTGATGATTATAAGAAATATTCAAGTCTGTGCCGGATGGTGCAAAAGTTGGTAAACGTGCTGAAGCAAATGGACCCAAAAGATCCATTTCGGGTAGAGATGACTGATAAGCTCTTGGAAAAGCTGTACAATATTGGTGTGATTCCAACCAGGCAAAGTATTACACTTTGTGAACGTTTAACAGTGTCATCCTTTTGTAGGCGAAGGCTCGCAACTGTTTTGGTGCGATTAAAATTTGCCGAGTACTTGAAAGAAGCTGTCACATACATTGAGCAAGGGCATATAAGAGTTGGTCCAGAGACAGTCACTGATCCAGCATTCCTGGTAACCAGAAATATGGAAGACTTCATCACATGGGTGGATTCATCAAAGATAAAGAGAAAGGTTCTACAGTACAATGACAAATTGGATGACTATGATTTAATGAACTGA 765 0.3974 MVVSGLPRIKQESLTSISYVSFLHLLLLLTSTDVVDGNLGPFYPPPFVKPTVIIGRELYNLRADFGFRRRKAMRKLKFHEKKLLKKVNFLEWKREGGHRENHVMQRYHITGRDDYKKYSSLCRMVQKLVNVLKQMDPKDPFRVEMTDKLLEKLYNIGVIPTRQSITLCERLTVSSFCRRRLATVLVRLKFAEYLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDLMN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1327 254 SUPERFAMILY Alpha-L RNA-binding motif 98 247 - -
Lele26g1327 254 PANTHER 30S 40S RIBOSOMAL PROTEIN 77 250 IPR022801 GO:0003735|GO:0015935|GO:0019843
Lele26g1327 254 FunFam U3 small nucleolar ribonucleoprotein IMP3 179 251 - -
Lele26g1327 254 CDD S4 179 247 - -
Lele26g1327 254 SMART s4_6 179 242 IPR002942 GO:0003723
Lele26g1327 254 Pfam Ribosomal protein S4/S9 N-terminal domain 75 177 IPR001912 GO:0019843
Lele26g1327 254 SMART Ribosomal_S4_2 75 178 IPR001912 GO:0019843
Lele26g1327 254 Pfam S4 domain 179 225 IPR002942 GO:0003723
Lele26g1327 254 Gene3D - 179 254 IPR036986 GO:0003723
Lele26g1327 254 ProSiteProfiles S4 RNA-binding domain profile. 179 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1327 Lele-ChrLele26 8964124 8967565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1327 135 220 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 2.10e-08 51.2