Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1322 ATGGCTCACTCCCTCTGCACTCATCAGATGCTCCCTGAAGCTCTATCCCTCATGCGATTCTTAGTGTCTTGGAAAGGAAAGGACTCTACTTCTTTATTGTTTGCGTCTGTTCTTCAAACAAGAGTTGCCCACCAATCCAATATTGTATTTGATGTTTTAATTCATGCTTATTTGGATTCTGGATTTGTTGCGGATGCAATTCAATGTTTTCGGTTGGCTAGGACAAATAATCTTCAAGTCCCACTTCGTTCTTGTGGTGATCTGCTTGATAAGACGATGAAGTTGAAATCAGCCGAATCTGCCTTGGCATTCTATTTGGAATTTTTTTTTTTCTGGTCACATACAATGCACTGGTCAATGGCCTTAGATTTGAAAGAGGCCAGGAAGCTTCTAGACGAGATGAATGCAAATGGATTGAAGCCTGACAAGATCACTTTCACTACGCTAATGGATGGATTTTGTAAGGATGGAGATCTTGAAGTGGCCTTGGAGATCAAGCAGAGAATGATTGAAGAAGGGATCAAACTTGATGACGTGGCTTTCACTGCACTTATTTCTGGACTCTGTAAATATGGAAGAGTTCAGGACGCGGAAAAAATGTTGAGGGAGATGATGAATTCTGGTTTCAAACCCAATGATGGCACATTCACTATGGTTATTGATGGTTTTTACGCAATGCTTAATTTGAGGGTAGTTCCAGATGATATTTCATTGAACATTTTGCTAGAAGGTCATTGCAAGCATGGTAGTCCTGAAGAAATTGAGCTATTTAGAAGTGAGAAAGGACTTATTACAGATTATGCTTCTTATACTGCACTTCTTAGTGAAGCAACTAAAGTTTCCAAAGATCGCAGAAAGAGATGA 864 0.397 MAHSLCTHQMLPEALSLMRFLVSWKGKDSTSLLFASVLQTRVAHQSNIVFDVLIHAYLDSGFVADAIQCFRLARTNNLQVPLRSCGDLLDKTMKLKSAESALAFYLEFFFFWSHTMHWSMALDLKEARKLLDEMNANGLKPDKITFTTLMDGFCKDGDLEVALEIKQRMIEEGIKLDDVAFTALISGLCKYGRVQDAEKMLREMMNSGFKPNDGTFTMVIDGFYAMLNLRVVPDDISLNILLEGHCKHGSPEEIELFRSEKGLITDYASYTALLSEATKVSKDRRKR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1322 287 Gene3D Tetratricopeptide repeat domain 225 286 IPR011990 GO:0005515
Lele26g1322 287 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Lele26g1322 287 TIGRFAM PPR: pentatricopeptide repeat domain 144 177 IPR002885 -
Lele26g1322 287 Pfam PPR repeat family 177 223 IPR002885 -
Lele26g1322 287 Pfam PPR repeat 237 255 IPR002885 -
Lele26g1322 287 Pfam PPR repeat 137 169 IPR002885 -
Lele26g1322 287 Gene3D Tetratricopeptide repeat domain 49 224 IPR011990 GO:0005515
Lele26g1322 287 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Lele26g1322 287 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Lele26g1322 287 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 123 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1322 Lele-ChrLele26 8913265 8914708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1322 47 282 Glycosyltransferase AT1G05670 27.203 6.31e-24 99.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1322 26 8913265 8914708 Lele25g1330 25 9093551 9097052 CCT
Lele26g1322 26 8913265 8914708 Lele26g1340 26 9060684 9069978 CCT
Lele26g1322 26 8913265 8914708 Lele28g1331 28 9049811 9059106 CCT
Lele26g1322 26 8913265 8914708 Lele27g0773 27 15803683 15805494 hybridization
Lele26g1322 26 8913265 8914708 Lele28g1314 28 8902227 8903609 hybridization