Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1306 ATGGCTACTTCCTTGGATATGTCACTTGATGATAGGATAAAAACCAGAAGTAACAGGGAGAGGGGTAGAGGGCGTGGCAGAGCCCCACGTGGCCGTGGAGCAGGTCAGAATCTTGGCGGTGGAAGAATGCCTAGTGCAGCTCGTAGAGCTCCTCTTGGAATTAATTCTCGGCCATCTGCTTATGCCATTGCCAAGTCCATTCGCAGAACCAGGCGTTTTCCATGGCAGCATGATTTATTCGAAGATAGCCTAAAAGCTGCAGGGATACAAGGAGTAGAAGTAGGCACAAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAACGAAGATATAAGGGAACTTTTCGCAGAGATTGAAGGCTTGAAGCGCTATGCAGTTCACTATGACAGAAATGGACGTCCTAGTGGTTCAGCTGAAGTTGTCTATAATAGAAGGAGTGATGCATTTGCAGCTCTTAAACGATACAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCAAATGCAGAATTGCCTTTATCCGCTCGTGTGAACGTTTCTGGGATAAATGGCCAGAGGAAGAGGACAGTTGTCATGACGCCTGGAGGTCGACCTGGAGGTAGAGGTGGGGGTCCTGCTATGTTTAATCGTGGTCCAGGTTGGGGACGTCGTGGTGGTGGAAGGAGTGGTGGTGGAGGCGGTGGACGAGCTAGGGGTCGGGGCCGTGGTGGTCGGGGTCGAGGTGGTGGTCGGGGTCGAGGGCATGTGAAGAAGGATGCGGTTGAGAAGTCTGCAGATGATCTTGACAAGGAACTAGAAACTTATCATGCTGAGGCCATGCACATCTCATGA 849 0.4982 MATSLDMSLDDRIKTRSNRERGRGRGRAPRGRGAGQNLGGGRMPSAARRAPLGINSRPSAYAIAKSIRRTRRFPWQHDLFEDSLKAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFAEIEGLKRYAVHYDRNGRPSGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPLSARVNVSGINGQRKRTVVMTPGGRPGGRGGGPAMFNRGPGWGRRGGGRSGGGGGGRARGRGRGGRGRGGGRGRGHVKKDAVEKSADDLDKELETYHAEAMHIS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1306 282 Gene3D - 91 172 IPR012677 -
Lele26g1306 282 MobiDBLite consensus disorder prediction 1 50 - -
Lele26g1306 282 MobiDBLite consensus disorder prediction 252 268 - -
Lele26g1306 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Lele26g1306 282 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 280 - -
Lele26g1306 282 Coils Coil 257 277 - -
Lele26g1306 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Lele26g1306 282 SMART rrm1_1 97 169 IPR000504 GO:0003723
Lele26g1306 282 SMART FoP_duplication_2 209 282 IPR025715 -
Lele26g1306 282 MobiDBLite consensus disorder prediction 198 268 - -
Lele26g1306 282 MobiDBLite consensus disorder prediction 9 24 - -
Lele26g1306 282 CDD RRM_THOC4 96 170 - -
Lele26g1306 282 SUPERFAMILY RNA-binding domain, RBD 20 170 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1306 Lele-ChrLele26 8772907 8775752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1306 61 231 Eukaryotic Initiation Factors Gene Family AT1G49760 27.807 6.02e-09 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1306 26 8772907 8775752 Lele25g1300 25 8797088 8797772 CCT
Lele26g1306 26 8772907 8775752 Lele26g1305 26 8763291 8772876 CCT
Lele26g1306 26 8772907 8775752 Lele27g0789 27 15984430 15985114 CCT
Lele26g1306 26 8772907 8775752 Lele28g1295 28 8722835 8723517 CCT
Lele26g1306 26 8772907 8775752 Lele27g0786 27 15969544 15972613 hybridization
Lele26g1306 26 8772907 8775752 Lele28g1298 28 8736992 8739835 hybridization