Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1305 ATGGCGACTGAACCTCCTTCGCTTCCTTCTTACCCAGAGATGATAATGAAGGCTCTGGAGGCTCTGAACGAACCGGCTGGTTCAAACAAATCGTCGATCGCGAAGCACATAGAAGATACCTACGGCGAGTTACCGGCAAGTCACTCGACGTTGCTTTCTGACCATCTGAACAGGATGAAAGAGAGTGGAGAACTCGTGTTGGCGAAGAACAACTACATGAAACCCGACCCGAATGCCCCACCCAAAAGAGGTAGGGGCAGGCCACCCAAGCCCAAGGCCCCTCTACCTCCGGGTACCGTCCTTTCCCCACCCAGGCCCAGAGGGCGCCCACCAAAGGACCCAAATGTCTCCACTAAGCCCAAAACCTCAACCGGCAGTGGCAGGCCCAGAGGAAGGCCCAAGAAGGTGGCCAGGACTTCAGCGGAGAGCGGGCCAGTGGTGAGCCGGGGCAGAGGCCGGCCTCCGAAGGAGAAGCCTACACTGACTGAAGATAAAAAATTTGTCATGAAAATGCAAAATGTCTTTTTTGGTTCAAGACAGAGAACATTTCATTGGATATTCAATTTCCTTTGTTTTGTGGTTTTGCTTTTCTTCTTTTACAATCGGGAAGATGTTATTCATAACCCACTTCTTAGGCAATCTACATATTTGGCACACCATCATTTGCCTCCAAGAGCAGTGATTCACCGGCAAATGTTTGAAATCGGCCTTAACTCATCAAGGCTAGCTGTTGAGCTTCATCAGAATAATTATACTGTAAATAATGCTGAACTTTGTCCTGGATTATTCCACCATGATGGTTATTCTAGCAAATGTGAATACTTAAAGGCAAATCCACAGTGTAATTCTGGAGGAATTTTTGATCACATAAGATTTTTATATTGTACATGTCAAAATTTTCAAGGGCTGGGCTACCTAATATTGGGTATATGGCTAGCTGCATTGTTCTACCTACTGGGGAACACAGCTGCAGACTTCTTCTGTCCATCTCTGGAGTTTCTCTCAAGGCTCTTGAAATTTCCTCCAACTGTTGCTGGGGTTGTACTCCTTCCACTTGGAAATGGTGCACCTGATGTGTTTTCCAGTATTGCATCCTTTGTTGGTACAGATACAGGGGAAGTGGGACTTAATAGCGTGTTAGGTGGTGCTTTATTTGTTACCTGTGTTGTTGTTGGAACTGTTTCTCTTTGTGTGTCCGGTAAAGGAATTCAAATTGATAGAAGATGCTTTATAAGGGATGTTAGCTTCTTTCTATTCACTCTTTTGTCGCTTTTGCTGATCCTGGTTGTTGGTAAGGTGGGAGTTGGCATAGCCATTACTTTCGTATCAATTTACATTGTTTATGCATTTTTTGTTGCTGCAAATGAGCTATTTTGGAAACATGCACGAAGGTTAAAATTGGATGCTGTCACACCAATGCTTACTGTCCGTGGAGGTATGTTCTCCCTTGGATCTGAAGAAGAATCTTCTGTATATAGCTCTTTGCTTGACATAGACACGGACGATGATCCTCCCCATCTCCCTCCTTCCTTGCCACAGTGGATGTGGTCTTCAAATGTGGCAATCTATTCAAACAAGGCTAATAAAGCTTATGTGATGGATGATGAAAGGCCTCCTTGGGGATGGAGTGATGGGAGTGAGGAAACCACCAATTCGACTTTCACTGTAGCAAAATTATTTTTACTGATGGAGATGCCACTGACAATTCCTAGACGGCTGACAATTCCCTTGGTCCATGAGGAAGTTTGGTCAAAAAAATATGCTGTGGCGAGTGCTTCACTGGCTCCAATTCTCCTGGCCATTTTGTGGAACACTCAAGATAATGTGGGTTATCTGAGCGCTGTGATTTCCTATTGCATTGGTGGTGTTCTTGGATGCACACTTGGTGTTCTTGCCTATAAATACACTTTACCCAATTATCCGCCGCAGAGGTTTTTGATTGCTTGGGTTCTTGGAGGATTTGTCATGAGCATAGTGTGGTTCTACATAATAGCAAATGAGCTTGTTGCTGTATTGGTGTCATTTGGTGTAATTTTAGGAATTAATCCATCTATCCTGGGATTAACTGTATTAGCATGGGGTAATTCAATGGGGGATTTGACGTCAAATGTTGCATTGGCAATAAATGGAGAAGATGGAGTTCAGATTGCTTTATCTGGATGCTATGCAGGGCCAATGTTCAACACACTTGTTGGTTTGGGGATCTCGATGCTGCTAGGGGCCTGGTCGGCAAAACCCGAATCATACTTGGTTCCCGAAGACCGAAGCTTATTTTACACTATGGGGTTTCTTTTCTCAGCACTGATCTGGGCCCTTATCGTTCTACCTCGCAACGACATGCATCCTGACAAAAAACTAGGAGTGGGCCTCGTCACCCTTTATATTATATTTCTTTCTTTCAGGTTGTCCACTGCTGTGGGGCTTATACCACATTGTGTTGAGGCCTTCTTCGCTCGCTCTTCTTCTCATAGCTTTGCTCCTGATTTCCCTCACCCTCTCTCGTCCTCTCTTTCTTTCGCTCGCTCCAAATCTGCACTTTTCAATTCTTGGTTGACTAGCAACCCTTCCTTCATATTGATCGGACGATTTTGTTACAATCTCCAGGTGTTCATTAGTAGCATTTCCTGA 2628 0.4467 MATEPPSLPSYPEMIMKALEALNEPAGSNKSSIAKHIEDTYGELPASHSTLLSDHLNRMKESGELVLAKNNYMKPDPNAPPKRGRGRPPKPKAPLPPGTVLSPPRPRGRPPKDPNVSTKPKTSTGSGRPRGRPKKVARTSAESGPVVSRGRGRPPKEKPTLTEDKKFVMKMQNVFFGSRQRTFHWIFNFLCFVVLLFFFYNREDVIHNPLLRQSTYLAHHHLPPRAVIHRQMFEIGLNSSRLAVELHQNNYTVNNAELCPGLFHHDGYSSKCEYLKANPQCNSGGIFDHIRFLYCTCQNFQGLGYLILGIWLAALFYLLGNTAADFFCPSLEFLSRLLKFPPTVAGVVLLPLGNGAPDVFSSIASFVGTDTGEVGLNSVLGGALFVTCVVVGTVSLCVSGKGIQIDRRCFIRDVSFFLFTLLSLLLILVVGKVGVGIAITFVSIYIVYAFFVAANELFWKHARRLKLDAVTPMLTVRGGMFSLGSEEESSVYSSLLDIDTDDDPPHLPPSLPQWMWSSNVAIYSNKANKAYVMDDERPPWGWSDGSEETTNSTFTVAKLFLLMEMPLTIPRRLTIPLVHEEVWSKKYAVASASLAPILLAILWNTQDNVGYLSAVISYCIGGVLGCTLGVLAYKYTLPNYPPQRFLIAWVLGGFVMSIVWFYIIANELVAVLVSFGVILGINPSILGLTVLAWGNSMGDLTSNVALAINGEDGVQIALSGCYAGPMFNTLVGLGISMLLGAWSAKPESYLVPEDRSLFYTMGFLFSALIWALIVLPRNDMHPDKKLGVGLVTLYIIFLSFRLSTAVGLIPHCVEAFFARSSSHSFAPDFPHPLSSSLSFARSKSALFNSWLTSNPSFILIGRFCYNLQVFISSIS 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1305 875 MobiDBLite consensus disorder prediction 62 163 - -
Lele26g1305 875 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Lele26g1305 875 SMART AT_hook_2 148 160 IPR017956 GO:0003677
Lele26g1305 875 SMART AT_hook_2 127 139 IPR017956 GO:0003677
Lele26g1305 875 SMART AT_hook_2 104 116 IPR017956 GO:0003677
Lele26g1305 875 FunFam HMG-Y-related protein A 3 85 - -
Lele26g1305 875 Gene3D - 340 471 IPR044880 -
Lele26g1305 875 Gene3D - 571 802 IPR044880 -
Lele26g1305 875 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 7 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele26g1305 875 Pfam Sodium/calcium exchanger protein 650 801 IPR004837 GO:0016020|GO:0055085
Lele26g1305 875 Pfam Sodium/calcium exchanger protein 310 452 IPR004837 GO:0016020|GO:0055085
Lele26g1305 875 Gene3D - 3 85 IPR036388 -
Lele26g1305 875 SMART h15plus2 5 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele26g1305 875 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 185 809 - -
Lele26g1305 875 MobiDBLite consensus disorder prediction 90 113 - -
Lele26g1305 875 Pfam linker histone H1 and H5 family 9 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele26g1305 875 PRINTS AT-hook-like domain signature 102 113 IPR017956 GO:0003677
Lele26g1305 875 PRINTS AT-hook-like domain signature 125 135 IPR017956 GO:0003677
Lele26g1305 875 PRINTS AT-hook-like domain signature 82 92 IPR017956 GO:0003677
Lele26g1305 875 CDD H15 5 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele26g1305 875 SUPERFAMILY "Winged helix" DNA-binding domain 4 83 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1305 Lele-ChrLele26 8763291 8772876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1305 259 807 Antiporters AT5G17850 42.039 1.29e-117 367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1306 26 8772907 8775752 Lele26g1305 26 8763291 8772876 CCT
Lele27g0786 27 15969544 15972613 Lele26g1305 26 8763291 8772876 CCT
Lele28g1298 28 8736992 8739835 Lele26g1305 26 8763291 8772876 CCT
Lele25g1300 25 8797088 8797772 Lele26g1305 26 8763291 8772876 CCT
Lele25g1269 25 8557567 8560869 Lele26g1305 26 8763291 8772876 CCT
Lele26g1305 26 8763291 8772876 Lele26g1305 26 8763291 8772876 ECH
Lele26g1305 26 8763291 8772876 Lele27g0789 27 15984430 15985114 hybridization
Lele26g1305 26 8763291 8772876 Lele28g1295 28 8722835 8723517 hybridization