Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1281 ATGGAGCTTGAGTACCACAAGTCTGTGCTTGAGGAAGAAGATGAGTTCAGCAACGATTCTGTCATAACCCATATTCCTGAGGAAGCAAAGTCTCTCATCAACTTCAAAGCCATTAATAATGGTGGTGAATCGTCTTTGCTTAGCTTTCAGCAGAAAGATTACTGTTTGTGGGACAATAATAATGATGGTCTGCATCATCATCAGAATTCAGACCCAAGACTGATTCAGGATTTTAACTGCATTCAAACTTCAAGTGGTCACTATGGAGGATCAAAAGAGAAGCAGCAGCAGCAAGGTGAGAGTAGTTCATATGGTGGGTGGCTATATTCTGTACCAAGTGTTCCTTCTGATAATAACAGCCTTCAGAATTATTCACCAAGAACAAAAGAAGCATCCTTCCATCATAAGCGCCTTTCAATGGTAGAGAGCATGCAAGTGTCGAAGAAGCAATGCACTGCTGCAAGTAAAAGTACACCAAAACCAACAAAGGCAAACCCATCCAAGGATCCTCAGAGTATAGCAGCCAAGAACAGAAGAGAGAGGATAAGCGAGCGACTCAAGATACTTCAAGAACTAGTTCCTAATGGCTCCAAGGTACTGGCGACTGATGAATTTTGGCCCGTGCAAGGAGGAAAAGCGCCTGATATTTCTCAAGCAAAAGAAGCCATTGATGCCATTCTTTCATCTCAGAGAGACAGAAACTCATCATCAACCTCAAAGCAACATCCTTAA 732 0.4235 MELEYHKSVLEEEDEFSNDSVITHIPEEAKSLINFKAINNGGESSLLSFQQKDYCLWDNNNDGLHHHQNSDPRLIQDFNCIQTSSGHYGGSKEKQQQQGESSSYGGWLYSVPSVPSDNNSLQNYSPRTKEASFHHKRLSMVESMQVSKKQCTAASKSTPKPTKANPSKDPQSIAAKNRRERISERLKILQELVPNGSKVLATDEFWPVQGGKAPDISQAKEAIDAILSSQRDRNSSSTSKQHP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1281 243 MobiDBLite consensus disorder prediction 144 177 - -
Lele26g1281 243 MobiDBLite consensus disorder prediction 86 108 - -
Lele26g1281 243 MobiDBLite consensus disorder prediction 144 172 - -
Lele26g1281 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 229 IPR011598 GO:0046983
Lele26g1281 243 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 71 199 IPR045843 GO:0003700|GO:0006355
Lele26g1281 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1281 Lele-ChrLele26 8462443 8463664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1281 62 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 44.500 8.90e-40 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1282 26 8467930 8469817 Lele26g1281 26 8462443 8463664 CCT
Lele27g0814 27 16190551 16193916 Lele26g1281 26 8462443 8463664 CCT
Lele28g1274 28 8506813 8510096 Lele26g1281 26 8462443 8463664 CCT
Lele25g1268 25 8553519 8554788 Lele26g1281 26 8462443 8463664 CCT
Lele26g1281 26 8462443 8463664 Lele25g1267 25 8538303 8541322 CCT
Lele26g1281 26 8462443 8463664 Lele26g1280 26 8443352 8446329 CCT
Lele26g1281 26 8462443 8463664 Lele27g0816 27 16213426 16216468 CCT
Lele26g1281 26 8462443 8463664 Lele28g1272 28 8487867 8490878 CCT
Lele26g1281 26 8462443 8463664 Lele25g1286 25 8689563 8691365 CCT
Lele26g1281 26 8462443 8463664 Lele26g1295 26 8586761 8588554 CCT
Lele26g1281 26 8462443 8463664 Lele27g0800 27 16078070 16079872 CCT
Lele26g1281 26 8462443 8463664 Lele28g1286 28 8625373 8627151 CCT
Lele26g1281 26 8462443 8463664 Lele26g1281 26 8462443 8463664 ECH
Lele26g1281 26 8462443 8463664 Lele27g0815 27 16196886 16198146 hybridization
Lele26g1281 26 8462443 8463664 Lele28g1273 28 8502357 8503565 hybridization