Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1280 ATGGATATTTCTTCTCCCTCTTCCTCTCCCTCCTCCTCCGGCGCTCTCAGTCCTGACTCCAATCTCGATGCCGACACTCCCCGAACCCCCCTCGCCGTCCGTCGAGCCCTCCAGCTCCTGCAATCTGACGTCCCCGATCTCAAGCTCCAAGCCGCTCGCGATATTCGCCGCCTCACCAAAACCTCCCAGCGTTGTCGCCGACAGCTCTCTCAAGCTGTCGGTCCCCTCGTTTCCATGCTCCGACTCGACTCCTCCGAGTCTCACGAGCCTGCTCTTCTCGCTCTGCTCAACCTTGCCGTCAAAGACGAAAAGAACAAAATCAGCATTGTGGAAGCTGGTGCTTTAGAACCGATAATTTCTTTCCTGAAGTCACAAAATGTAAACCTGCAAGAGTGCGCCACAGCATCTTTGCTCACTTTATCCGCCTCTGCAACCAATAAACCAATCATTTGTGCTTCTGGAGCCATTCCTCTTCTTGTGGAGATCCTCAGAGATGGAAGCCCACAAGCTAAGGCTGATGCAGTAATGGCTCTTTCCAATTTATCCACCCACCCTGACAATCTCAGCGCCATTCTCGAAACAGATCCAATCCCTTTCATAGTTGACCTTCTCAAAACCTGTAAAAAATCCTCGAAAACAGCCGAGAAGTGCTGTGCTTTGATAGAATCCTTGGTGGGTTTTGACGAGGGGAGGACCGCCTTGACATCCGAAGAAGGCGCGGTTCTCGCAGTCGTGGAAGTTCTTGAAAATGGCTATCTCCAGAGCAGGGAGCATGCAGTCGGAGCATTGTTAACTATGTGCGAAAGCGATCGATGTAAATACCGGGAACCGATTCTTAGAGAAGGCGTAATCCCAGGACTTCTGGAGCTTACCGTTCAGGGAACACCCAAGTCTCAGTTAAAAGCCCGGAACCTTCTGCAACTACTGAGAGAAACTCCATATCCGAGATCTGAGATTCAACCAGACACTCTTGAGAACATAGTTTGCAATATCATATCCCAGATTGATGGGGATGATCAGTCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAGCAAAGGGCTCTTGTGTTCACCCCCACAAGTGATCGGCCCACTATTACTAACTGTGCTTCTGAAGTGTCTTCAAAATGA 1170 0.5 MDISSPSSSPSSSGALSPDSNLDADTPRTPLAVRRALQLLQSDVPDLKLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRLDSSESHEPALLALLNLAVKDEKNKISIVEAGALEPIISFLKSQNVNLQECATASLLTLSASATNKPIICASGAIPLLVEILRDGSPQAKADAVMALSNLSTHPDNLSAILETDPIPFIVDLLKTCKKSSKTAEKCCALIESLVGFDEGRTALTSEEGAVLAVVEVLENGYLQSREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARNLLQLLRETPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVFTPTSDRPTITNCASEVSSK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1280 389 MobiDBLite consensus disorder prediction 1 24 - -
Lele26g1280 389 Pfam Armadillo/beta-catenin-like repeat 103 137 IPR000225 GO:0005515
Lele26g1280 389 Pfam Armadillo/beta-catenin-like repeat 146 182 IPR000225 GO:0005515
Lele26g1280 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Lele26g1280 389 SMART arm_5 102 142 IPR000225 GO:0005515
Lele26g1280 389 SMART arm_5 184 226 IPR000225 GO:0005515
Lele26g1280 389 SMART arm_5 61 100 IPR000225 GO:0005515
Lele26g1280 389 SMART arm_5 143 183 IPR000225 GO:0005515
Lele26g1280 389 SMART arm_5 227 268 IPR000225 GO:0005515
Lele26g1280 389 SUPERFAMILY ARM repeat 36 332 IPR016024 -
Lele26g1280 389 MobiDBLite consensus disorder prediction 1 27 - -
Lele26g1280 389 PANTHER U BOX DOMAIN-CONTAINING 20 316 - -
Lele26g1280 389 FunFam U-box domain-containing protein 4 19 369 - -
Lele26g1280 389 Gene3D - 150 365 IPR011989 -
Lele26g1280 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 194 IPR000225 GO:0005515
Lele26g1280 389 Gene3D - 31 149 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1280 Lele-ChrLele26 8443352 8446329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1280 33 310 U-box Gene Family AT2G23140 34.643 5.18e-40 148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1281 26 8462443 8463664 Lele26g1280 26 8443352 8446329 CCT
Lele27g0815 27 16196886 16198146 Lele26g1280 26 8443352 8446329 CCT
Lele28g1273 28 8502357 8503565 Lele26g1280 26 8443352 8446329 CCT
Lele25g1267 25 8538303 8541322 Lele26g1280 26 8443352 8446329 CCT
Lele26g1280 26 8443352 8446329 Lele26g1280 26 8443352 8446329 ECH
Lele26g1280 26 8443352 8446329 Lele27g0816 27 16213426 16216468 hybridization
Lele26g1280 26 8443352 8446329 Lele28g1272 28 8487867 8490878 hybridization