Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g1270 ATGCGCTGTTTCAGAGGCTATAAGATGCGGAGGTACGGTCCAGGATACTACAGTCCTCCTAGGAGAGGATATGGTGGCGGTGGCGGGAGAAGCCCGCCTAGGAGGGGATACGGTGGAGGCAGACGCAGGGAACAAAATCATGGGAGCCTTTTGGTTCGGAACATTCCTCTCGATTGCCGACCTGAGGAACTTCGAGTTCCATTCGAGCGATTTGGACCTGTCCGGGATGTCTACCTACCGAAGGACTATTACACTGGAGAACCTCGTGGATTTGCATTTGTGCAATTTGTGGATCCTTATGATGCTTCAGAGGCACAGTATCATATGAATGGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTCTTGCTGCAGAGTCAAGGAAAAGACCAGAGGAGATGCAGGACCAGGAGGCTATGGGGGGCGAAGGTCAGGTTATTATGGTCGATCCCGATCTCGTTCAGTTTCAAGATCACGCTCCCCACGTCATCGCTCTGGTTCTAGAAGTAGATACCATTCAAGGTCCTATTCTCCTGCCCCAAGAAGGCGAGGTGATTATTCTGTTTCCCCTAGACCACGTGGCGGGCATCCTAGGTCACCAAGAGGTCCTTCTGTGGAGCGAGATGGTGATCAAAAGCGCAGGTCATATTCTCCAGGTTATGGCAATGGCCCAGATTATCATGCAGCCAATGTATATGATGAGAAACCTATGTATGACGCTGAGGCTGCACGAGACCAGTGGGGGAAATCACCGCGCAGAGCATCAAGATCACCCATTGGGTCGAGATCAAGGTCTGCTGATTTGTCTCCTAGACGTGGCTGATGAGATGGTTGGCGATATTATGCTGGGCTTCTGTACAATTCTATGA 870 0.5057 MRCFRGYKMRRYGPGYYSPPRRGYGGGGGRSPPRRGYGGGRRREQNHGSLLVRNIPLDCRPEELRVPFERFGPVRDVYLPKDYYTGEPRGFAFVQFVDPYDASEAQYHMNGQIFAGREISVVLAAESRKRPEEMQDQEAMGGEGQVIMVDPDLVQFQDHAPHVIALVLEVDTIQGPILLPQEGEVIILFPLDHVAGILGHQEVLLWSEMVIKSAGHILQVMAMAQIIMQPMYMMRNLCMTLRLHETSGGNHRAEHQDHPLGRDQGLLICLLDVADEMVGDIMLGFCTIL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g1270 289 SMART rrm1_1 49 122 IPR000504 GO:0003723
Lele26g1270 289 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 43 134 - -
Lele26g1270 289 SUPERFAMILY RNA-binding domain, RBD 10 124 IPR035979 GO:0003676
Lele26g1270 289 MobiDBLite consensus disorder prediction 18 47 - -
Lele26g1270 289 Gene3D - 42 147 IPR012677 -
Lele26g1270 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Lele26g1270 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 119 IPR000504 GO:0003723
Lele26g1270 289 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 27 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g1270 Lele-ChrLele26 8364272 8368337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g1270 13 111 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 2.86e-09 55.5